Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02061 ATGCAAACTCCAAAAGGGTTTGAGGGGAGATTGCCGCAGCCTCAGAGGGCCCTTTCTCTTCACTTCTCTGCGCGTCTCTTTCTGTTACACAACACGCGCAGGAACCAAAATAAAGAACCACCGACAAGCGAGGAAGATGGAGCAAGCAAGAGGAATATCGCCTTTATTACTATCTGTACCATCTTCCTTGTGGGTTGTGTCATAGGCATCGCATTTAGCGTTAACGTGGAGACGGAAAGTTCCGACAATGGAAGACGACAGAAGGACCGCGTTATTTCCTCTGTGAAAGCGGTGAAAATCCTTTGTAAACCCACAGTGTACCAGAAAGAATGTGAGAATAGCCTGATGAAAGATGCTGGGAACATCACAGACTCCAGAGAACTCATTAAACTTGCATTCAGTGTAACCATGAAGAAAATAGGTAAAGAACTACAAAAAATAGATAACATGCGCAAGAATGAGAGTGACCCCAGAGCCAAGATGGCGCTTGCAACATGCAAGCAACTGCTCGGTCTTTCCGCTGGAGAATTCCAAAGGTCAATTGAGAAAATGGGCAAGTTTGATCTCGACAATCTGAACAATATCCTCACTAGTTTGAAAGTTTGGCTTAGCGGTGCAATCACGTACCAAGAGACTTGCCTGGATGGTTTCAAGAACACCACCACCCATGCACGGATTAAGATGAGGAACTTGTTGACCACTTCCATGCACTTGAGCAGCAACGCCCTTGCCATCATCTCAACGCTTGCTAGTACTGTCGAATTGGTCGGGGGTCGCAACCTTGCTGAGGGTGGCGAACATGTTTTTGGTCACGGTGAGGTTATTCCCTCGTGGGTTGTTGATGATGATATTGGTGGTGGTATTCGTAGACTCCTTCATCAAAGTTCTCACAGATTGAAGGCTAATGCGATTGTGGCCAAAGATGGTAGCGAAAAGTTCAAGAGCATCGGCGAGGCATTAAAGAAGGTGCCTAAGAAGAACAAGAAGCCATTCGTGATTTACATTAGGGAGGGTGTTTATCGTGAGTACGTTGAAGTTTCTAAAACCATGACTCGGGTCGTCTTTGTCGGTGATGGTGCCAATAAAACACGAATCACAGGCAAGAGAAACTTCGTGGATGGGATGATTACTTACAAAACCGCCTCAGTTGCTATTCATGGAGATTACTTTGTGGCCCTGAATATAGGGTTTGAGAATTCCGCTGGTCCACAGAAACATGAAGCAGTAGCCATAAGGGTCCAAGCAGACAGATCCATTTTCTACAGATGCTCAATAGATGGGTACGAGGGGACGTTGCATGTTCATGCGATGCGTCAATTTTATAGGGAATGCACGGTTTCAGGCACCGTGGATTTTGTGTTTGGTGATGCAGTGGCTGTATTTCAAAAGTGCACTTTCGTGGTGAGAAAGCCATTGAAAAACCAACAATTGATAGTGACTTCTCAAGGTAGAAAGGAGAAGCAGCAACCATCAGGAATAGTGATCCAAGGAAGCTCCATAGTGGCTAAGCGTAAAGTGAAGTCTGGTAGCAAGGCTTACCTTGGTCGTCCACTGAAGAATTACTCGAGGACCATCTTCATGAACACTTACATGGAAGACATTATTAAACATGAGGGATATATGGCAAAGCAAGGAAGACGGGGTCCTGTAGGTATGAACACTTGTTTCTATGGTGAGTACAATAACAGTGGTCCTGGTTCAAACAAATCGAAGCGTGTAAAATGGCGTGGGATCAAGAAACTCAATGCAGAATCTGCGAGGCAATTCACACCACTCAAGTTTTTTCATGGAGATCAATGGGTTAGAATTACTAGGATTCCTTACTACCCTGACATCCTCCCCAAGCGCTAA 1851 0.4522 MQTPKGFEGRLPQPQRALSLHFSARLFLLHNTRRNQNKEPPTSEEDGASKRNIAFITICTIFLVGCVIGIAFSVNVETESSDNGRRQKDRVISSVKAVKILCKPTVYQKECENSLMKDAGNITDSRELIKLAFSVTMKKIGKELQKIDNMRKNESDPRAKMALATCKQLLGLSAGEFQRSIEKMGKFDLDNLNNILTSLKVWLSGAITYQETCLDGFKNTTTHARIKMRNLLTTSMHLSSNALAIISTLASTVELVGGRNLAEGGEHVFGHGEVIPSWVVDDDIGGGIRRLLHQSSHRLKANAIVAKDGSEKFKSIGEALKKVPKKNKKPFVIYIREGVYREYVEVSKTMTRVVFVGDGANKTRITGKRNFVDGMITYKTASVAIHGDYFVALNIGFENSAGPQKHEAVAIRVQADRSIFYRCSIDGYEGTLHVHAMRQFYRECTVSGTVDFVFGDAVAVFQKCTFVVRKPLKNQQLIVTSQGRKEKQQPSGIVIQGSSIVAKRKVKSGSKAYLGRPLKNYSRTIFMNTYMEDIIKHEGYMAKQGRRGPVGMNTCFYGEYNNSGPGSNKSKRVKWRGIKKLNAESARQFTPLKFFHGDQWVRITRIPYYPDILPKR 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02061 616 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 97 249 IPR035513 -
Vimu3g02061 616 Pfam Pectinesterase 302 598 IPR000070 GO:0030599|GO:0042545
Vimu3g02061 616 NCBIfam pectinesterase inhibitor domain 96 249 IPR006501 GO:0004857
Vimu3g02061 616 Pfam Plant invertase/pectin methylesterase inhibitor 97 245 IPR006501 GO:0004857
Vimu3g02061 616 Gene3D Invertase/pectin methylesterase inhibitor family protein 93 250 IPR035513 -
Vimu3g02061 616 SMART PMEI_2 93 245 IPR006501 GO:0004857
Vimu3g02061 616 ProSitePatterns Pectinesterase signature 2. 446 455 IPR033131 -
Vimu3g02061 616 SUPERFAMILY Pectin lyase-like 299 610 IPR011050 -
Vimu3g02061 616 CDD PMEI-like_3 101 251 - -
Vimu3g02061 616 FunFam Pectinesterase 94 250 - -
Vimu3g02061 616 Gene3D - 296 612 IPR012334 -
Vimu3g02061 616 PANTHER PECTINESTERASE 63 602 - -
Vimu3g02061 616 FunFam Pectinesterase 4 299 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02061 Vimu-Chr3 35537295 35539369 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02061 44 613 Carbohydrate Esterase AT3G05610 44.923 6.54e-177 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02061 K01051 - gmx:100810853 763.066