Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02060 ATGGCAACAAAAATGAAGAGCTGGACCACCTTGTACACCCTTGTTTTCCTCTTCATTCTCTTCCTTTCTTCCTCTCATGTTGCTTTCTCCTTCTCAGATAGCACATGCAACACTACACCCTACCCTGCATTCTGCAAAACCACTCTACCACCTCAACATTTATCCACACATGACCAATGCCGTTTCCTCCTTCACCAATCCTTATCAACAACAAAAACGCTTGCTGCATTGCTCTCTTCTTATCTCTCAAACAGCTACGCCATTCCTAGTTCAACATTACACGCCCTTCAAGATTGCTTCAACCTTTCACAACTCAACATTGATTTCTTCTCCAATGTCCTCCAAGCCATTGAAAACACCGTGACTGGTTATCAAGTCTACGACTTGCATACCTTGCTCAGTGCCACTTTAACCAATCAACAAACGTGCTTGAATGGTTTTAATGAGGTAACTCCCTATCCTGTAGTTACTAATGCTTTGTCAAGTCCACTTTCCGATGCGATCAAACTATATAGCATATCTTTGGCCCTTTTCACCCGTGGTTGGGTTAGCGATGCCATGGAAGGATCAACCACAGTTGAGACTATTGCTAATAGAAAGTTACTCCAAACAAGCGTTGACAATGTGGAGGTGAGGCAAAAGGTAGTGGTGAACCCTGATGGGTCTTGTGATTTCACCACCATAAATGATGCAGTGGCTGCTGCACCTGAAAACAGCGGCACCAACAACGGGTACCATGTAATCTATGTTGTCGCGGGGACTTACAATGAGTACGTGTCTATTCCTAAGAGCAAGCAGAACCTGATGTTGGTTGGAGATGGTATCAACCGCACCGTACTCACTGGCGATCGCAGCGTGGTCGATGGCTGGACCACTTTCCAATCTGCAACTTTTGCTGTTGTTGGAAAAGGGTTTGTTGCCGTGAACATAACATTTCGTAACACTGCTGGGTCCAGCAAGCATCAAGCTGTGGCTGTGAGAAACGGGGCAGACATGTCTACGTTCTATAATTGCAGTTTTGAGGGTTACCAAGACACACTGTACGTACACTCCCTAAGGCAATTCTACAAACGCTGTGACATTTATGGCACAGTGGATTTTATATTCGGCAATGCAGCAACAATATTCCAGGATTGTAGCATGTATCCAAGACTCCCTATGCAAAACCAGTTCAATGCAATCACAGCACAAGGCCGAACAGATCCAAACCAAAACACTGGAATCTCCATACAGAACTGCTGCATAATAGGAGCAAGTGAATTGGGTGATGCTACTAGCAATTATAATGGGATACAGACATATTTGGGTAGGCCTTGGAAGGAGTATTCTAGGACTGTTTACATAAAATCTTGCATGGATGGCCTAATTGATCCAAAGGGGTGGACAGAATGGTCAGGGGATTTTGCTTTGAGCACACTGTATTATGCAGAGTTTGCTAACTGGGGACCTGGTTCAAACACCAGCAATAGGGTCACATGGGAAGGCTACCATCTCATAGATGAAAAGGATGCACTTGACTTCACGGTACAGAAGTTTATTCAAGGTGACAAATGGCTACCCTCCACAGGAGTACCTTTCAACGCTGGGTTACAGTAA 1596 0.4467 MATKMKSWTTLYTLVFLFILFLSSSHVAFSFSDSTCNTTPYPAFCKTTLPPQHLSTHDQCRFLLHQSLSTTKTLAALLSSYLSNSYAIPSSTLHALQDCFNLSQLNIDFFSNVLQAIENTVTGYQVYDLHTLLSATLTNQQTCLNGFNEVTPYPVVTNALSSPLSDAIKLYSISLALFTRGWVSDAMEGSTTVETIANRKLLQTSVDNVEVRQKVVVNPDGSCDFTTINDAVAAAPENSGTNNGYHVIYVVAGTYNEYVSIPKSKQNLMLVGDGINRTVLTGDRSVVDGWTTFQSATFAVVGKGFVAVNITFRNTAGSSKHQAVAVRNGADMSTFYNCSFEGYQDTLYVHSLRQFYKRCDIYGTVDFIFGNAATIFQDCSMYPRLPMQNQFNAITAQGRTDPNQNTGISIQNCCIIGASELGDATSNYNGIQTYLGRPWKEYSRTVYIKSCMDGLIDPKGWTEWSGDFALSTLYYAEFANWGPGSNTSNRVTWEGYHLIDEKDALDFTVQKFIQGDKWLPSTGVPFNAGLQ 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02060 531 CDD PMEI-like_3 34 182 - -
Vimu3g02060 531 FunFam Pectinesterase 208 530 - -
Vimu3g02060 531 NCBIfam pectinesterase inhibitor domain 13 178 IPR006501 GO:0004857
Vimu3g02060 531 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
Vimu3g02060 531 Gene3D - 208 530 IPR012334 -
Vimu3g02060 531 Pfam Pectinesterase 215 516 IPR000070 GO:0030599|GO:0042545
Vimu3g02060 531 Pfam Plant invertase/pectin methylesterase inhibitor 31 177 IPR006501 GO:0004857
Vimu3g02060 531 SUPERFAMILY Pectin lyase-like 215 529 IPR011050 -
Vimu3g02060 531 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 180 IPR035513 -
Vimu3g02060 531 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 180 IPR035513 -
Vimu3g02060 531 SMART PMEI_2 27 177 IPR006501 GO:0004857
Vimu3g02060 531 PANTHER PECTINESTERASE 21 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02060 Vimu-Chr3 35534710 35536555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02060 14 530 Carbohydrate Esterase AT4G02330 49.735 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02060 K01051 - gmx:100810329 867.07