Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02054 ATGTCGTCTGAGCCGCTGATTCCATCGTCGGAAGCATTGACAACTTCTCATTCCTTCAGGCGATGCGGCGAAACGGTGTGGATTTTCGATGAGTTGCCGAAGGCCACCGTCGTTTCCGTGTCGAGGCCAGACACTGGTGACATTAGCTCAATACTCCTTTCTTATACCATTCAGTTGCACTGTCCAATGTTATTTGGCGAATTTGAGTGGGACAGACGAATGAACATCTCTGGTTTTGTTTTGTTTTGTCAAATGATCTTCAATTGGGTGTTTAACTGGCGTCTAGTGAAGAAGGCATCACAACTTCTTTATTTACAGTTCTGTCTGCGAAAACGTGCAATAATTGAAGATTTCCATGACAGGCAAGAACAGCCTAATTTCTATCTTAATACAACTCGTGAAGTTGAAAGAATGGCTCCAAAACTTGGGAATAGCAGATCAAACGGAGGGCAGCAGTCAATTGCAAATAGAGCCAAAGTCGCAATGCAGGGTTATTTGAACCATTTTTTAGAAAACTTGGATATTGTGAATTCTCAAGAGGCGATGTTGTTAATTGATGGCATTAGGTTTTTGGAAGTCTCCAAGCTATCCTTTATACAGGAGTATGGTCCAAAACTGAAAGAGGGATATGTAATGGTGAAGCATTTGTCAAATATTTCACAGGAGTTGGACGTATCATGTTTCCCGTGTAATTGGTTTCGTTGCTGTAATAACAGCTGGAAGAAGGTATGGGCTGTTTTGAAACCTGGGTTTTTGGCCCTCTTGGATGATCCCTTCAGCAACAAACCACTCGATATAATTATTTTTGATATCCTCCCTTCCTCTGATGGAGCTGGAGGGACCAAAGCATATTTGGCTGATCCTATAAAAGGACGCAATCCTTTGCGTTATTCATTCAAGGTTAGTAGTGGAAATAGGAGCATATTGTTGAGAACTACCAGTAGTCCTAAAGTAAAAGCTTGGGTTGCTGCAATAAATGAAGCTAGTCTGAGACCACTTGAAGGTTGGTGTTGTCCTCATCGCTTTGGTTCCTTTGCCCCCATAAGAGGCTTGACTGAAGATGGGAGTCAAGCCCAATGGTTTGTTGATGGACATGCTGCATTTGAAGCTATTGCTACTTCAATTCAAGATGCAAAGTCAGAGATCTTCATCACAGGCTGGTGGCTATGCCCAGAGCTATATCTGAGGCGACCTTTTCATAGTTATTCTACCTCTCGGTTAGATTCCTTACTAGAAGAAAAGGCTAAGCAAGGGGTTCAGATCTACGTGCTTCTCTACAAGGAGGTTTCTTTAGCTTTGAAAATCAACAGCTCGTATAGTATGAGAAGACTGCTAAAAATTCATGAGAATGTGAAGGTATTGCGCTATCCAGATCATTTCGCTGCTCGTGTGTATTTATGGTCGCACCATGAAAAACTTGTAATTATTGATTACAAGATTTGCTATATTGGAGGATTAGATTTATGCTTTGGTCGGTATGACACACCTGAACATAAAGTGGGTGACTGCCCTTCTGTAATATGGCCTGGAAAGGACTACTACAACCCAAGGGAATCTGAGCCAAATTCATGGGAAGACACCATGAGAGATGAATTGAATCGCAAGAAATATCCCCGTATGCCGTGGCATGATGTCCATTGTGCTCTTTGGGGACCTCCCTGTCGTGACATTGCTCGACATTTTGTCCAACGTTGGAACCATGCTAAGAGAACCAAAGCTCCAAATGAACATGAAATTCCTCTACTCATGCCTCACCATCACATGGTCCTTCCTCATTACATGGGAAGAAGCAGAGAGATAGACATTGAAGAAAAGAAAGATGAAGACAAAAGGAAAGAAATTGTCCAGCAAGATTCATTTTCTTCAGAGTCTCCAGTGCAAGACATACCACTACTTTTACCTCAAGAAGCTGATGGAATTGTTACTTCAAATGGAGATCATACAAATTTTAGTGAAATTTCTCCATCAATGGAGGACGAAACTCCAGTTTCAGACACACAGACGAAAGGTTTTGAAGATGAAGTTGTTCGTTTACACTTGGGAGCACAATCTTTTGTCGATGTTCTAGATGATTGGTGGGAAGCACCAGAAGGCACCAATGATGACACTACTTTGGAGTATGGACAAGTTGGTCCACGCATCACCTGTCATTGCCAGGTAATCAGAAGTGTCAGCCAGTGGTCTGCTGGAACAAGTCAGCCCGAAGAAAGCATTCACACGGCATACTGTTCCCTTATTGAAAAAGCAAAACATTTTATCTACATTGAGAACCAATTTTTCATATCAGGTCTATCAGGGGATGACACAATACAGAACCGTATTTTGGAAGCTTTATATAGGCGTATCTTGCAAGCCCACAAAGAACAGAAAGATTTTAGAGTTATAGTAGTGATTCCCCTCTTACCTGGCTTCCAGGGTGGTCTAGATGATGGTGGTGCTGCTACTGTGAGAGCCTTAACACATTGGCAGTATAGAACGATTTCTAGAGAAAAGCACTCAATACTATACAGTCTTGAAACCATACTTGGTCCTAAGAGTCATGATTATATTTCTTTCTATGGTTTACGATCTCATGGTAGACTCTATGAAAATGGTCCTGTGGCTACAAGTCAGGTGTATGTGCACAGTAAATTGATGATAATTGATGATCGTGTATCTTTTATTGGATCATCTAATATAAATGACCGCAGTTTGCTTGGTTTAAGAGACTCTGAGATTGGAGTGCTTATAGAAGATAAAGAATGTGTTGAGTCTTTGATGAATGGAAAGCCATGGAAGGCTGGAAAATTTTCCTATAGCCTCCGCTGCTCCTTATGGTCTGAGCACCTTGGTCTTCATACCGGAGAGATCAGTAAAATCAGTGATCCGGTGGTAGATACAACCTACAAGGACTTGTGGTCAGCAACTGCAAAGGAAAATGCTAGTATATACCATGAGGTCTTTGCTTGCATTCCCAACGATGAAATACACTCAAGAGCTGCACTTCGGCAAAGCATGGTTCAGTTGAAAGAAAAACTTGGTCATAACACCATAGATATGGGAATAGCCCCTGATAAGTTGGTCTGTCATGAGAATGGAGAAATCAAAACAATAGACCCAATAGATAGGTTGAAGTCTGTGAAGGGACACCTTGTTTCCTTTCCTTTGGAGTTCATGAGTGAGGAAGATCTAAGACCAGCTGTTATGGAGAGCGAGTTTTATGTTGCTCCTCAAGTCTATCATTGA 3225 0.4167 MSSEPLIPSSEALTTSHSFRRCGETVWIFDELPKATVVSVSRPDTGDISSILLSYTIQLHCPMLFGEFEWDRRMNISGFVLFCQMIFNWVFNWRLVKKASQLLYLQFCLRKRAIIEDFHDRQEQPNFYLNTTREVERMAPKLGNSRSNGGQQSIANRAKVAMQGYLNHFLENLDIVNSQEAMLLIDGIRFLEVSKLSFIQEYGPKLKEGYVMVKHLSNISQELDVSCFPCNWFRCCNNSWKKVWAVLKPGFLALLDDPFSNKPLDIIIFDILPSSDGAGGTKAYLADPIKGRNPLRYSFKVSSGNRSILLRTTSSPKVKAWVAAINEASLRPLEGWCCPHRFGSFAPIRGLTEDGSQAQWFVDGHAAFEAIATSIQDAKSEIFITGWWLCPELYLRRPFHSYSTSRLDSLLEEKAKQGVQIYVLLYKEVSLALKINSSYSMRRLLKIHENVKVLRYPDHFAARVYLWSHHEKLVIIDYKICYIGGLDLCFGRYDTPEHKVGDCPSVIWPGKDYYNPRESEPNSWEDTMRDELNRKKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRTKAPNEHEIPLLMPHHHMVLPHYMGRSREIDIEEKKDEDKRKEIVQQDSFSSESPVQDIPLLLPQEADGIVTSNGDHTNFSEISPSMEDETPVSDTQTKGFEDEVVRLHLGAQSFVDVLDDWWEAPEGTNDDTTLEYGQVGPRITCHCQVIRSVSQWSAGTSQPEESIHTAYCSLIEKAKHFIYIENQFFISGLSGDDTIQNRILEALYRRILQAHKEQKDFRVIVVIPLLPGFQGGLDDGGAATVRALTHWQYRTISREKHSILYSLETILGPKSHDYISFYGLRSHGRLYENGPVATSQVYVHSKLMIIDDRVSFIGSSNINDRSLLGLRDSEIGVLIEDKECVESLMNGKPWKAGKFSYSLRCSLWSEHLGLHTGEISKISDPVVDTTYKDLWSATAKENASIYHEVFACIPNDEIHSRAALRQSMVQLKEKLGHNTIDMGIAPDKLVCHENGEIKTIDPIDRLKSVKGHLVSFPLEFMSEEDLRPAVMESEFYVAPQVYH 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02054 1074 CDD PH_PLD 188 328 - -
Vimu3g02054 1074 ProSiteProfiles PH domain profile. 204 330 IPR001849 -
Vimu3g02054 1074 MobiDBLite consensus disorder prediction 605 629 - -
Vimu3g02054 1074 Pfam Phospholipase D Active site motif 465 492 IPR001736 GO:0003824
Vimu3g02054 1074 SUPERFAMILY PH domain-like 199 331 - -
Vimu3g02054 1074 SUPERFAMILY Phospholipase D/nuclease 709 920 - -
Vimu3g02054 1074 Gene3D Endonuclease Chain A 352 591 - -
Vimu3g02054 1074 CDD PLDc_vPLD1_2_yPLD_like_2 730 914 - -
Vimu3g02054 1074 SUPERFAMILY Phospholipase D/nuclease 317 585 - -
Vimu3g02054 1074 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 465 492 IPR001736 GO:0003824
Vimu3g02054 1074 PIRSF PLD_euk 9 148 IPR016555 GO:0004630|GO:0006654|GO:0048017
Vimu3g02054 1074 PIRSF PLD_euk 91 1074 IPR016555 GO:0004630|GO:0006654|GO:0048017
Vimu3g02054 1074 Pfam PLD-like domain 743 917 IPR025202 -
Vimu3g02054 1074 SMART PH_update 205 332 IPR001849 -
Vimu3g02054 1074 SMART pld_4 870 897 IPR001736 GO:0003824
Vimu3g02054 1074 SMART pld_4 465 492 IPR001736 GO:0003824
Vimu3g02054 1074 Gene3D - 200 329 IPR011993 -
Vimu3g02054 1074 Gene3D Endonuclease Chain A 693 933 - -
Vimu3g02054 1074 PANTHER PHOSPHOLIPASE D 263 1057 IPR015679 -
Vimu3g02054 1074 Pfam PH domain 207 329 IPR001849 -
Vimu3g02054 1074 CDD PLDc_vPLD1_2_yPLD_like_1 358 503 - -
Vimu3g02054 1074 FunFam Phospholipase 704 924 - -
Vimu3g02054 1074 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 870 897 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02054 Vimu-Chr3 35456627 35465937 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02054 28 1074 Phospholipase D Gene Family (Wang group) AT3G05630 60.183 0.0 1274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02054 K01115 - gmx:100796914 1813.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02054 3 35456627 35465937 Vimu3g02054 3 35456627 35465937 ECH