Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02053 ATGTCGTCTGAGCCGCTGATTCCACCGTCGGCAGCATTGTCAACCTCTCACTCCTTTAGGCGATGCGGCGAAACGGTGTGGATTTTCGATGAGATGCCGAAGGCCACCGTCGTTTCCGTGTCGAAGCCAGACACCGGAGACATTAGCTCAATACTCCTTTCTTATACCATTCAGTTGCATGTGAGACCACTTGAAGGTCGGTGTTGTCCTCATCGCTTTGGTTCCTTTGCTCCCATAAGAGGCTTGACTGAAGATGGGAGTCAAGCCCAATGGTTTGTTGATGGACATGCTGCATTTGAAGCTATTGCTACTTCAATTCAAGATGCAAAGTCAGAGATCTTCATCACAGGCTGGTGGCTATGCCCAGAGCTATATCTGAGGCGACCTTTTCATAGTTTTTCTACCTCTCGGTTAGATTCCTTACTAGAAGAAAAGGCTAAGCAAGGGGTTCAGATCTACGTGCTTCTCTACAAGGAGGTTTCTTTAGCTTTGAAAATCAACAGCTCGTATAGTATGAGAAGACTGCTAAAAATTCATGAGAATGTGAAGGTATTGCGCTATCCAGATCATTTCGCTGCTCGTGTGTATTTATGGTCTCACCATGAAAAACTTGTAATTATTGATTACAAGATTTGCTATATTGGAGGATTAGATTTATGCTTTGGTCGGTATGACACACCTGAACATAAAGTGGGTGACTGCCCTTCTGTAATATGGCCCGGAAAGGACTACTACAACCCAAGGGAATCTGAGCCAAATTCATGGGAAGACACCATGAGAGATGAACTGAATCGCAAGAAATATCCCCGTATAATATATATCGAGACATCTTTTGATTTTGCCAAAAGTTTACAATGGTCTCATCAAGCATTTTGCTCTGGGCCCTGGAGAGTGTATGTGCACAGTAAATTGATGATAATTGATGATCGTGTATCTTTTATTGGATCATCTAATATAAATGACCGCAGTTTGCTTGGTTTAAGAGACTCTGAGATTGGAGTGCTTATAGAAGATAAAGAATGTGTTGAGTCTTTGATGAATGGAAAGCCATGGAAGGCTGGAAAATTTTCCTATAGCCTCCGCTGCTCCTTATGGTCTGAGCACCTTGGTCTTCATACCGGAGAGCTCTTGGGATTTCTTCTCCCTCACCGCTTGCTCAACAACACTACTGATTTCCCTCGATCTGGCACGGCTGCTCTTCACTCGATTGTTCCCCGCCCGCCAAATTTTCATCACCGTATTCTTCTTCTTCTTCCTCCTCTTCTACTCACCCTGTGGTGTGGTCCATTGGGTCGAATCCTAAGCAAATGA 1311 0.4416 MSSEPLIPPSAALSTSHSFRRCGETVWIFDEMPKATVVSVSKPDTGDISSILLSYTIQLHVRPLEGRCCPHRFGSFAPIRGLTEDGSQAQWFVDGHAAFEAIATSIQDAKSEIFITGWWLCPELYLRRPFHSFSTSRLDSLLEEKAKQGVQIYVLLYKEVSLALKINSSYSMRRLLKIHENVKVLRYPDHFAARVYLWSHHEKLVIIDYKICYIGGLDLCFGRYDTPEHKVGDCPSVIWPGKDYYNPRESEPNSWEDTMRDELNRKKYPRIIYIETSFDFAKSLQWSHQAFCSGPWRVYVHSKLMIIDDRVSFIGSSNINDRSLLGLRDSEIGVLIEDKECVESLMNGKPWKAGKFSYSLRCSLWSEHLGLHTGELLGFLLPHRLLNNTTDFPRSGTAALHSIVPRPPNFHHRILLLLPPLLLTLWCGPLGRILSK 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02053 436 PANTHER PHOSPHOLIPASE D 295 372 IPR015679 -
Vimu3g02053 436 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 296 323 IPR001736 GO:0003824
Vimu3g02053 436 SMART pld_4 196 223 IPR001736 GO:0003824
Vimu3g02053 436 SMART pld_4 296 323 IPR001736 GO:0003824
Vimu3g02053 436 SUPERFAMILY Phospholipase D/nuclease 286 370 - -
Vimu3g02053 436 SUPERFAMILY Phospholipase D/nuclease 61 229 - -
Vimu3g02053 436 Gene3D Endonuclease Chain A 82 254 - -
Vimu3g02053 436 CDD PLDc_vPLD1_2_yPLD_like_1 89 234 - -
Vimu3g02053 436 Pfam Phospholipase D Active site motif 196 223 IPR001736 GO:0003824
Vimu3g02053 436 Pfam Phospholipase D Active site motif 300 323 IPR001736 GO:0003824
Vimu3g02053 436 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 196 223 IPR001736 GO:0003824
Vimu3g02053 436 Gene3D Endonuclease Chain A 255 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02053 Vimu-Chr3 35446014 35449037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02053 28 65 Phospholipase D Gene Family (Wang group) AT3G05630 57.895 4.06e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02053 K01115 - gmx:100796914 426.787