Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02052 TTGATACGCTGGAATCATACTGCAGTGTTGATGGGGCATTTTTCATCTGCGTTCAGTAGATTGGCAAAGTCCTTTGCAACGAAGAGAAGTGGGAGTTCTGATGGATACAACGGAAGAGAAGCTGCGGAAGCAATGGCAAAGGAAGCCAAAAAAAATCACTTCATGTTACATAGCTCCGGCACCATTAACGTTGACGGTTCAAACAACTTTGCCTCGCTTTTCTCCAAAAAAGGAAAGAAAGGAGTCAATCAGGATTGCTGCGTAGTCTGGGAAGAATTTGGATGCCAAGAGGACATGATTTTCTGCGGGATTTTTGACGGGCACGGGCCATGGGGTCACTTTGTGGCCAAGAGAGTAAGAGAGTCAATGCCACCATCTTTGCTATGCAACTGGCAGGAGACACTTTCCCAAACTTCACTTGATCCAGATGTTGATGTTGATATTACGGCAGAGAAAAAGCAACACCGGTTTAATATATGGAAGCACTCTTACTTGAAGACCTGTGCTGCCATTGATCGAGAACTAAAGCAGAATCGCAAGATAGATTCATTTTTCAGCGGAACAACTGCCCTGTCCATTGTTAGACAGGGTGAATTAATTGTAATTGCAAACGTTGGTGACTCTCGTGCCGTTTTAGCCACAGCATCAGATGATGGAAGTTTGGTAGCAGTTCAGTTGACAGTAGATTTCAAGCCCAGTTTACCTGAGGAAGCGGAGAGAATAGTGGAGTGCAAAGGACGAGTTTTCTGCTTGGAAGACGAGCCTGGGGTGTACAGGGTGTGGTTACCGGATGAGGAGTCACCAGGACTTGCCATGTCAAGGGCTTTTGGTGACTACTGCGTCAAAGAGTATGGTCTTATTTCAGTGCCTGAAGTAACACACAGGAACATAACCAGCAAAGACCAGTTTGTCGTACTAGCCACTGATGGGGTGTGGGATGTAATCTCCAATCAAGAAGCAGTGGATATTGTGTGTTCAACAGCAGACAGAACAGAGTCTGCGAAACATTTGGTGGAGTGTGCGATGCGTGCATGGAAACGCAAGAGGAGGGGCATTGCAATGGACGATATTTCAGCTATTTGTCTCTTCTTTCACTCTTCACCATCACTTCACCAAGTTCATGCCACCCTAGAATAG 1137 0.4582 MIRWNHTAVLMGHFSSAFSRLAKSFATKRSGSSDGYNGREAAEAMAKEAKKNHFMLHSSGTINVDGSNNFASLFSKKGKKGVNQDCCVVWEEFGCQEDMIFCGIFDGHGPWGHFVAKRVRESMPPSLLCNWQETLSQTSLDPDVDVDITAEKKQHRFNIWKHSYLKTCAAIDRELKQNRKIDSFFSGTTALSIVRQGELIVIANVGDSRAVLATASDDGSLVAVQLTVDFKPSLPEEAERIVECKGRVFCLEDEPGVYRVWLPDEESPGLAMSRAFGDYCVKEYGLISVPEVTHRNITSKDQFVVLATDGVWDVISNQEAVDIVCSTADRTESAKHLVECAMRAWKRKRRGIAMDDISAICLFFHSSPSLHQVHATLE 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02052 378 PANTHER PROTEIN PHOSPHATASE 50 362 IPR015655 GO:0004722|GO:0006470
Vimu3g02052 378 CDD PP2Cc 69 364 IPR001932 -
Vimu3g02052 378 FunFam Probable protein phosphatase 2C 34 61 366 - -
Vimu3g02052 378 ProSiteProfiles PPM-type phosphatase domain profile. 70 364 IPR001932 -
Vimu3g02052 378 SMART PP2C_4 61 362 IPR001932 -
Vimu3g02052 378 Gene3D - 64 366 IPR036457 -
Vimu3g02052 378 Pfam Protein phosphatase 2C 94 342 IPR001932 -
Vimu3g02052 378 SUPERFAMILY PP2C-like 69 366 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02052 Vimu-Chr3 35423434 35425024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02052 11 365 PP2C-type Phosphatase Gene Family AT3G05640 70.195 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02052 - - gmx:100793051 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02052 3 35423434 35425024 Vimu3g02052 3 35423434 35425024 ECH
Vimu6g01894 6 17135256 17136939 Vimu3g02052 3 35423434 35425024 PCT
Vimu2g01944 2 14143164 14146958 Vimu3g02052 3 35423434 35425024 PCT