Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02042 ATGGTTAGGGGAGGAAGGTTTAGTGGCAAACGCAATTTCAGAAAAAGGGTTCGGTCAAATGAGGGAGGTTCCGATGATTCGGATGAGGACTATGTGGTTTCAGATGATGGCAGAGAGGTATCTGACTACTATTGCTCCTCCTTTGATGGATGTGCGTCAGAGGAAAGCTTTGGGAGTTTTTTGGAAGAGGAGGATGAGGAATTTCAAACAGTGAGGAATTTCAATAGATCCAAGGCAAAAAAGGGCACTGCTAGTAGGCCGAAAAGTGCCAGTAAAAAATCGCAGAAGAGGGAAAGGATTAAATATGCAGAAGATGAGGAAGAAGAGGAGGAGGTGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAGTTGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAATACAAAGTGGAGGAAGAGGAGGAGGAGGAGGAGGAAATTCAAGAAGCAAGGAATTTCAGTAGACCAAAGGCAAAAAATGGTGTATGCCGTAAGAAAAGAAGTGCAGGAAAAATCTCCTCAAAGAGGGGAAGGAAAATGCACACAGAACAATTGGAAGAGGAAGAGGAAGAGGTTAAACTAGAGGAGGAGGAGGAAGAGAAGAAGGTGCTCAGAGGTGGAGATGACAAAGAAGAGGAGGGAGATAGAGATGGAGAGGATGAAGATTTTGACTATGAGGATGAGGATGATGAGTTTTTTCCTGAGGAAGATGATTATTCAGATGAGGAAGAAGAAATGAGAGGGAAAAAGAAGAACAATGATGGCATGAAAATGGTCAAGAAGGTTTTTCAGAAGAAAAGGTCCTCTGTAGTTTCGACTAGAGGTAGAAAAAGGCAGAGTTCTAGAGCATCAAAGAAGCCCTTGAGAAAGAAAAGAAAGAATGGGAGGTTAAGGAAGAAAGTAAGATGTGAAGATGAAGATGAAGATGATTTTATAGATAATAGCCCAACCATGAGAACAAGTAGGAAAAAACGGGGCCAGAAGAGAAAAAGGGTACTTCTTTCAGATTCAGAATATCCATCTTCTGGATCGTCTGATTTTGAGTTTACTATATCTGAAGAAGAGAGAGAGCAGGTGAGAGAAGCCAAAAAATTATGCGGTAATTTGAGAAATAACTTGAGGAGTTCGTCCCAACAAATAAACAATGAAGAGGTTGGTGTCCGTGAGGAACAAATTCAGTTGCGGAAACCACCAGCTCGGAAGGGTAAGGAAAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGAGGTAAAAAGTGAGATGGGTAAGCAAGTGTGTGGGATTTGTCTGTCTGAAGAAGATAAAAGAAGAGTTAGGGGATGGGCAAAGGTGGAATCTCGTTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGCAAGCCTGCACGGTCAACCACAGGGATTGATTTAAGAGAAGTGGTGATACAAGTCCCCGAACGTGACCAGGTCTATCTGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAATCTGTTATTTGTTCAGAGTGCAATCAAGGTGGAGATGATGGCCTCATGCTACTATGTGATATCTGTGATTCCCCTGCGCACACATATTGTGTTGGTTTGGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGGTGGCTGTAGACCAGTCGCTCTGGGATCTTCAAGCTCCCAAGTTCAAGAAGGTGTGGCTGATCCAAGGTTGACAATCCAGAACCTTCCTGTTAGAGCACCTCCTGCTCTACATGTACGAGAAAGTATAGACCTCAACTTGATTTCCTCACCCCGTGCAGCTATTAATCAAGGTTTTGTGCATCTTCCATCTTCTAGATTTAGTGGCAGAAGTGTTGAAGGATCTTCTCCTGTATCTGGAGGAGCACCAACGTTATCAGAGAGACGCTGGATACACCGTCAAATTCAGCAGTTACTTTCTATAGATAGGATGACTGCTACACCTGGCAGAACCACCAATGGTATTTCCGCTACCAGTTCAACTAGTAACTTGTATAGCTCTCAAATTGATCAAAGTAGGGGAACCGCCACTCTTCATGTAAGGACGCAGGATGTGGGAACGTCATACCACACATTTTTTGATGACAGATTATGCAACAATACCTCCCCCCTAATGCAGAATGGGTCGTTATGGCCTGGACTTATGGCGACACCCCCAGTACCAGATTGTGAACAAGTTCATCAGTTCAGCAGATCAAATATTGTCCCTGATGATGGCTTATCCACTGCTGTCAGAGAAGAGACGAACTTTCACACTGCGAAGGAGCAGTTGCAGTCGATGGTTAAAAGCCACCTAAAGAGCTTGTCTCAAAATGTTGATTTAGGGGGATTTTTGCTACATTTGGGACTCGAATACATAGTGGGGCCTTCCCGTCTAGCAAACCTCATGGCCCGGATCATTATGAAATTCAGGACATACTTTGATGTCTGTGAAGAGAACCTTCGCCATAGTACTTTCAAGGATATTGCAAGGAGTTCTATGCACACCATACTAGCAGCCTGTGATCTTGAGCACAAGAACAATGAGGTTTGCAACGTGCCTCCTCCGTCTGCCTGTCCGCACATGGAACTAATGGCTGGCGGGCCAACTAGTCTGATTAAAGGAGATGTGGTGAAGAGGGTTTTGGACACAAGAGTTTCCTCCCAGTGGTTACGATTAGGTTTATAG 2700 0.4407 MVRGGRFSGKRNFRKRVRSNEGGSDDSDEDYVVSDDGREVSDYYCSSFDGCASEESFGSFLEEEDEEFQTVRNFNRSKAKKGTASRPKSASKKSQKRERIKYAEDEEEEEEVEEEEEEEEEEEEEEEELEEEEEEEEEEYKVEEEEEEEEEIQEARNFSRPKAKNGVCRKKRSAGKISSKRGRKMHTEQLEEEEEEVKLEEEEEEKKVLRGGDDKEEEGDRDGEDEDFDYEDEDDEFFPEEDDYSDEEEEMRGKKKNNDGMKMVKKVFQKKRSSVVSTRGRKRQSSRASKKPLRKKRKNGRLRKKVRCEDEDEDDFIDNSPTMRTSRKKRGQKRKRVLLSDSEYPSSGSSDFEFTISEEEREQVREAKKLCGNLRNNLRSSSQQINNEEVGVREEQIQLRKPPARKGKEKIEEPQGRKGKEKVEVKSEMGKQVCGICLSEEDKRRVRGWAKVESRCPLCKQRFKTISKPARSTTGIDLREVVIQVPERDQVYLPSEEELRSYIDPYESVICSECNQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCGGCRPVALGSSSSQVQEGVADPRLTIQNLPVRAPPALHVRESIDLNLISSPRAAINQGFVHLPSSRFSGRSVEGSSPVSGGAPTLSERRWIHRQIQQLLSIDRMTATPGRTTNGISATSSTSNLYSSQIDQSRGTATLHVRTQDVGTSYHTFFDDRLCNNTSPLMQNGSLWPGLMATPPVPDCEQVHQFSRSNIVPDDGLSTAVREETNFHTAKEQLQSMVKSHLKSLSQNVDLGGFLLHLGLEYIVGPSRLANLMARIIMKFRTYFDVCEENLRHSTFKDIARSSMHTILAACDLEHKNNEVCNVPPPSACPHMELMAGGPTSLIKGDVVKRVLDTRVSSQWLRLGL 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02042 899 MobiDBLite consensus disorder prediction 163 180 - -
Vimu3g02042 899 MobiDBLite consensus disorder prediction 389 424 - -
Vimu3g02042 899 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 425 565 IPR013083 -
Vimu3g02042 899 Coils Coil 93 155 - -
Vimu3g02042 899 ProSiteProfiles Zinc finger PHD-type profile. 508 557 IPR019787 -
Vimu3g02042 899 MobiDBLite consensus disorder prediction 248 266 - -
Vimu3g02042 899 Pfam PHD-finger 510 556 IPR019787 -
Vimu3g02042 899 SUPERFAMILY FYVE/PHD zinc finger 481 556 IPR011011 -
Vimu3g02042 899 Coils Coil 357 384 - -
Vimu3g02042 899 MobiDBLite consensus disorder prediction 218 247 - -
Vimu3g02042 899 Coils Coil 183 210 - -
Vimu3g02042 899 MobiDBLite consensus disorder prediction 393 424 - -
Vimu3g02042 899 MobiDBLite consensus disorder prediction 79 95 - -
Vimu3g02042 899 PANTHER F18C1.6 PROTEIN 131 786 - -
Vimu3g02042 899 SMART PHD_3 510 555 IPR001965 -
Vimu3g02042 899 MobiDBLite consensus disorder prediction 275 303 - -
Vimu3g02042 899 MobiDBLite consensus disorder prediction 202 217 - -
Vimu3g02042 899 MobiDBLite consensus disorder prediction 62 355 - -
Vimu3g02042 899 MobiDBLite consensus disorder prediction 104 152 - -
Vimu3g02042 899 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02042 Vimu-Chr3 35309213 35312299 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02042 505 554 C2H2 Transcription Factor Family AT3G01460 46.154 7.05e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu3g02042 PHD 4.7e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02042 - - vun:114191996 1309.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02042 3 35309213 35312299 Vimu3g02042 3 35309213 35312299 ECH