Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02040 ATGGCGACGAGAAATCGCACTCTGCTTTTCAGAAAACACAGAGATGCGTTGAAGGCTGTTCGCATTCCCTCCATCTCTTCGCCGCAGTCCACCTCCTCCCACGGCGGTGGCGGTGGCCCCGTCATCGAATTGGTCAGCACCTCACTTCTCAATCCCAATCGCTCTTACGCTCCGCTTAGTACCGACGATCCTGGTAATTCGAGTCGTGGTCCAAATGCAGTCAATTTGGGGCTACCTCCTGCGTGGGTGGATTTATCGGAAGAAATATCAGCAAATGTGCAACGTGCACGCACAAAAATGGCAGAGTTGGCCAAGGCTCATGCAAAGGCTTTGATGCCGTCATTTGGAGATGGGAAAGAAGATCAACATGCTATCGAGACTCTAACACACGAGATAACTGACTTAATAAAGAGGTCGGAGAAGAGACTCCGGAGACTTTCTGCTTCTGGGCCTTCTGAGGATTCCAATGTCAGAAAAAACGTGCAGCGATCTCTTGCTACTGACCTTCAGAACCTCTCTGTTGAGCTACGCAAGAAACAATCAACTTATTTAAAGCGCCTCAGACTACAGAAAGAGGGTCAAGATGGAGTTGATCTAGAGATCAACTTGAATGGAGGTAAATCAAGATTTGAAGATGATGATTTAGATAACATGGTATTTAATGAGCATCAAATGGCCAAGCTGAAGAAAAGTGAAGCATTCACAGTAGAAAGAGAAAAAGAGATCCAGCAGGTTGTGGAATCTGTGAACGAGCTTGCTCAGATCATGAAGGATTTATCAGTACTAGTCATAGACCAGGGAACCATCGTCGATAGAATAGACTACAACATTCAGAATGTTGCAACCACAGTTGAGGATGGGCTTAAACAGCTGCAGAAGGCAGAGAGAACTCAGAAAAAAGGGGGTATGGTAATGTGTGCTACTGTGCTTGTTATCATGTGCTTCGTAATGTTGGTTCTCTTAATCATTAAGGAAATTATTTTGTGA 987 0.4519 MATRNRTLLFRKHRDALKAVRIPSISSPQSTSSHGGGGGPVIELVSTSLLNPNRSYAPLSTDDPGNSSRGPNAVNLGLPPAWVDLSEEISANVQRARTKMAELAKAHAKALMPSFGDGKEDQHAIETLTHEITDLIKRSEKRLRRLSASGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSTYLKRLRLQKEGQDGVDLEINLNGGKSRFEDDDLDNMVFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCATVLVIMCFVMLVLLIIKEIIL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02040 328 SMART tSNARE_6 227 294 IPR000727 -
Vimu3g02040 328 PANTHER SYNTAXIN 86 313 IPR045242 -
Vimu3g02040 328 MobiDBLite consensus disorder prediction 46 73 - -
Vimu3g02040 328 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 232 294 IPR000727 -
Vimu3g02040 328 Coils Coil 323 328 - -
Vimu3g02040 328 Gene3D - 79 286 - -
Vimu3g02040 328 ProSitePatterns Syntaxin / epimorphin family signature. 238 277 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vimu3g02040 328 CDD SNARE_syntaxin16 237 293 - -
Vimu3g02040 328 MobiDBLite consensus disorder prediction 22 73 - -
Vimu3g02040 328 Pfam SNARE domain 268 320 IPR000727 -
Vimu3g02040 328 SMART SynN_4 73 188 IPR006011 GO:0016020
Vimu3g02040 328 FunFam Syntaxin-43 79 286 - -
Vimu3g02040 328 Coils Coil 86 106 - -
Vimu3g02040 328 SUPERFAMILY t-snare proteins 78 287 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02040 Vimu-Chr3 35294399 35299382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02040 1 317 SNARE and Associated Proteins AT3G05710 76.852 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02040 K08489 - gmx:100796741 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02040 3 35294399 35299382 Vimu3g02040 3 35294399 35299382 ECH
Vimu6g02081 6 18543570 18548828 Vimu3g02040 3 35294399 35299382 ECH