Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02038 ATGGTATCAAATAATAAGCAAACTTTCGAGGGGAATGAAATTGGTGAGCGCAGAGGTAACAGAATACCAATTATGCAATCTAGACAGAGACATAATGATCCAAAACAAGCACCTCTTAGAAATGTGAGAAAAGGGGTGTGGCCCAAGGACTATGAGTTGTACTTTGAACGTTTCTTTCGAAAAGTGGTACGCGAGGAGGTGGAACGTAGAATCCAAGATTACTTACCTGCAAGGGCATGGTTTGATCAGATTGGCGGTGATACGTCCAGAGAATCGCCCTTTGAGCTGCGTTTCACTAATAAATTGCCTGATATAATTTTTACCCACTCTAACGTCATATCAGAGGATAAAACACCCATTCAAATTGCTCTCTTTGATGTCAGAGACCAGTCAGTGGTTAATGTTGGCCCCCTCTCCTCTGCAAAGGTAGAAATCTGTGCCCTCAATGGCGAGTTCGGTTTCAATGGAAGTGAAGATTGGACTGAAGGTGAATTCAATGTCAATATCTTGCGTGAGAGAGATGGCCGAAGACCATTGTTGAATGGAGATAGACTTATAACATTGAAAAACGGAGTAGGTTGTATCAATAAAGTTATGTTCACGGATAATTCAAGGTGGATACGAAGCAGAAAGTTTAGGTTGGGAGCCAAAGTTATCCAAACAACTTCTAATGAAGCTAACATTAAGGAAGGTAGAAGCGAACCTTTTGTAGTCAAAGATTACAGAGGAGAATCTTACAAGAAACACCACCCTCCTTCCCTGAAGGATGACGTTTGGAGATTAAAACAAATTGCCAAAGATGGAAAAATTCACAAGAGGCTGTCCCTCCAGGGAATTCACACCGTGAAGGACCTTTTGCGGTTATACACAACAAATCCATCTTCATTACTTGAGAACGTTGGCAACATTTCAAAGAGATCATGGATGTCAATTGTTGAACATGTCAAGACTTGTGTGATAGATGACGACGAGACTTTCTTATACCAAGAACAATCTACAAGTTTGATTTTCAATTCCATCTATGTCCTTGTGGGTGTGAGTTTTGATGGACAAAATTATGTATCCCCTGATACTCTTAGCTCTGATGAGAAGCTTGTGGTGGAAATAATGAAGCAGCATGCTTACCAAAATATGGATAATCTCGTATCAGTTCACAAGACACCACTGAGCTGCTTAACACCAATGGCATGTGTAGGAGTGAGACAGTCTGATGCTACAGAGCAAGGTCATGGTCACCCATATGCCTCAACTTCATATGGGAATGAAGGCTTTCACAATCAGAATATCTACTCTGGTCCAAATTCAGTGCCAGACATAACAGACAAAATTATTGCATGTAACTCTCTGACTTGTGTCGTCTCCTATGGAAGTAACCTTTTCCCTCATATTCATCCAATTCAAATCAGTGGCATTTTCGAAAATGTGAGCGGATCCAGGTCCACTTTCGTCACAACTTCTGCTTCCACTTCCACCCTCGTATATAAACCTTTCACTTTCCACTTCCCCTATTCAAACTCTCTAAGAAAACCCAAAATTCTCTTTACTTTCCCATATCCAGTTATCCCAAACCCTACCGTACCGTTAGGTTCCCTAATTAAACACTCCCAGGAACGGTGCGCTGCTTCTTACTTCCTACAATTTCCGTCGATTCTCTCCGAAACGATGTCGTATCGCCCAAGTGGGAACACCAGGACCGAGGTCCGCCGGAACCGGTACAAGGTGGCGGTGGATGCCGAGGAAGGTCGGAGACGGCGAGAAGACACCATGGTGGAGATCCGGAAGAACCGCAGAGAAGAGAGTTTGCAGAAGAAGAGGCGTGAAGGGCTCCAACCTCAACAGATTCCTGCTTCCATTCACTCCACTTTGGTAGAGAAGAAGTTGGAACACCTACCATCAATGGTTGCTGGTGTTTGGTCTGAGGACAATAACCTGCAGCTCGAAGCAACGACTCAGTTTAGGAAGCTGCTTTCGATTGAACGAAGTCCCCCGATTGAGGAAGTTATTCAGACTGGTGTAGTTTCTCGGTTTGTCGAATTTCTGATAAGGGAAGACTTTCCGCAGTTGCAGTTTGAGGCCGCTTGGGCTTTGACAAATATAGCTTCTGGAACGTCTGAAAACACCAAGGTGGTGATTGACCATGGGGCAGTACCAATATTCGTGAAGCTACTTGCTTCCCCCAGTGATGATGTCCGTGAACAGGCGGTGTGGGCATTAGGAAATGTTGCTGGGGATTCTCCTAGATGCCGTGACCTTGTTCTCGGTCATGGAGCATTGATTCCTTTGTTAGCTCAATTGAACGAACAGGCGAAGCTTTCTATGCTTAGAAATGCTACTTGGACACTTTCGAACTTCTGTAGGGGCAAGCCACAGCCTCCTTTTGATCAGCAAAATATTTCCTCTCCTATTATGAAGTTGCAAATATGCTTTCAGGCTCTGAAACTAATGTCTATGCTAGGAGAAATAAGGAATAGAAGGGCTGGAAAAAGTATATGTTTCAAGAGGGTGGGTCGTGAGAGGGAGATGGAAATTTGGAAAGTTAAGGTTGCTCTGGCCACAGGGAGTGGTGTTCGTGAGATAGCTCACTTGTTAGGAGCCGAGTTTCAATCTCTCCAGTTGAATATATTTGCACTTGTGTACATCTTGAGTAGGCCATTATTATCAAATTATACTGTTAACTGCTGTCCTTACAATCACGCAAGCAAACAGGTTAAACCTGCACTGCCTGCTCTTGCACGTCTTATCCATTCAAATGATGAAGAAGTCTTGACTGATGCATGTTGGGCACTGTCATATCTTTCTGATGGTACAAATGATAAAATTCAAGCTGTAATTGAAGCTGGTGTTTGTCCCCGACTTGTTGAGCTTCTAATGCATCCATCCCCTTCAGTACTAATTCCTGCCCTTAGAACTGTTGGAAATATTGTCACTGGAGATGATATGCAAACACAGGTTATCATCAATCATCAGGCTCTTCCTTGTCTTCTGAATCTGTTGACCAATAATTATAAAAAAAGCATTAAGAAGGAAGCTTGTTGGACTATATCAAACATTACAGCTGGGAATAAACAGCAGATTCAGGCTGTGATTGAGGCTAATTTAATTACTCCTCTGGTCAACTTACTTCAAAATGCCGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCTATTTCAAATGCTACCTCTGGTGGTTCCCACGATCAAATCAAGTTCCTAGTAAGTCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATCTGTCCCGATCCTAGGATTGTGACAGTTTGCTTGGAAGGCCTTGAAAACATCTTGAAGGTGGGAGAAGCTGATAAAAGTATTGGCAACACTGGTGATGTGAATCTATATGCCCAAATGATTGATGACGCTGAGGGACTGGAGAAAATTGAGAACCTCCAGAGTCATGACAATACAGAGATTTATGAAAAGGCAGTGAAGATTCTTGAGACATATTGGTTGGAGGAGGAAGACGAGACTATGCCTCCTGGGGATGCATCTCAGTCAGGATTCAACTTTGGTAACAATGATGCTCCTGCTGTTCCTTCCGGTGGATTCAACTTTAATTAG 3582 0.4308 MVSNNKQTFEGNEIGERRGNRIPIMQSRQRHNDPKQAPLRNVRKGVWPKDYELYFERFFRKVVREEVERRIQDYLPARAWFDQIGGDTSRESPFELRFTNKLPDIIFTHSNVISEDKTPIQIALFDVRDQSVVNVGPLSSAKVEICALNGEFGFNGSEDWTEGEFNVNILRERDGRRPLLNGDRLITLKNGVGCINKVMFTDNSRWIRSRKFRLGAKVIQTTSNEANIKEGRSEPFVVKDYRGESYKKHHPPSLKDDVWRLKQIAKDGKIHKRLSLQGIHTVKDLLRLYTTNPSSLLENVGNISKRSWMSIVEHVKTCVIDDDETFLYQEQSTSLIFNSIYVLVGVSFDGQNYVSPDTLSSDEKLVVEIMKQHAYQNMDNLVSVHKTPLSCLTPMACVGVRQSDATEQGHGHPYASTSYGNEGFHNQNIYSGPNSVPDITDKIIACNSLTCVVSYGSNLFPHIHPIQISGIFENVSGSRSTFVTTSASTSTLVYKPFTFHFPYSNSLRKPKILFTFPYPVIPNPTVPLGSLIKHSQERCAASYFLQFPSILSETMSYRPSGNTRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLQPQQIPASIHSTLVEKKLEHLPSMVAGVWSEDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLIREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEQAKLSMLRNATWTLSNFCRGKPQPPFDQQNISSPIMKLQICFQALKLMSMLGEIRNRRAGKSICFKRVGREREMEIWKVKVALATGSGVREIAHLLGAEFQSLQLNIFALVYILSRPLLSNYTVNCCPYNHASKQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLMHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANLITPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKSIGNTGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGNNDAPAVPSGGFNFN 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02038 1193 MobiDBLite consensus disorder prediction 1 37 - -
Vimu3g02038 1193 SMART arm_5 744 786 IPR000225 GO:0005515
Vimu3g02038 1193 SMART arm_5 936 976 IPR000225 GO:0005515
Vimu3g02038 1193 SMART arm_5 1064 1104 IPR000225 GO:0005515
Vimu3g02038 1193 SMART arm_5 1021 1061 IPR000225 GO:0005515
Vimu3g02038 1193 SMART arm_5 894 934 IPR000225 GO:0005515
Vimu3g02038 1193 SMART arm_5 660 701 IPR000225 GO:0005515
Vimu3g02038 1193 SMART arm_5 978 1019 IPR000225 GO:0005515
Vimu3g02038 1193 SMART arm_5 703 743 IPR000225 GO:0005515
Vimu3g02038 1193 Pfam Importin beta binding domain 568 650 IPR002652 GO:0006606|GO:0061608
Vimu3g02038 1193 Pfam Calmodulin binding protein central domain 253 318 IPR046830 -
Vimu3g02038 1193 PANTHER IMPORTIN ALPHA 888 1163 - -
Vimu3g02038 1193 Gene3D - 845 1158 IPR011989 -
Vimu3g02038 1193 Gene3D - 628 819 IPR011989 -
Vimu3g02038 1193 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 671 714 IPR000225 GO:0005515
Vimu3g02038 1193 ProSiteProfiles IBB domain profile. 552 614 IPR002652 GO:0006606|GO:0061608
Vimu3g02038 1193 Pfam Calmodulin binding protein-like N-terminal domain 95 240 IPR046831 -
Vimu3g02038 1193 Pfam Atypical Arm repeat 1119 1165 IPR032413 -
Vimu3g02038 1193 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 905 947 IPR000225 GO:0005515
Vimu3g02038 1193 SUPERFAMILY ARM repeat 569 1162 IPR016024 -
Vimu3g02038 1193 Pfam Armadillo/beta-catenin-like repeat 703 742 IPR000225 GO:0005515
Vimu3g02038 1193 Pfam Armadillo/beta-catenin-like repeat 745 786 IPR000225 GO:0005515
Vimu3g02038 1193 Pfam Armadillo/beta-catenin-like repeat 661 701 IPR000225 GO:0005515
Vimu3g02038 1193 Pfam Armadillo/beta-catenin-like repeat 979 1019 IPR000225 GO:0005515
Vimu3g02038 1193 Pfam Armadillo/beta-catenin-like repeat 1065 1102 IPR000225 GO:0005515
Vimu3g02038 1193 Pfam Armadillo/beta-catenin-like repeat 1021 1060 IPR000225 GO:0005515
Vimu3g02038 1193 Pfam Armadillo/beta-catenin-like repeat 937 975 IPR000225 GO:0005515
Vimu3g02038 1193 Pfam Armadillo/beta-catenin-like repeat 906 933 IPR000225 GO:0005515
Vimu3g02038 1193 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 714 756 IPR000225 GO:0005515
Vimu3g02038 1193 FunFam Importin subunit alpha 871 1158 - -
Vimu3g02038 1193 MobiDBLite consensus disorder prediction 1163 1193 - -
Vimu3g02038 1193 Gene3D - 567 606 IPR036975 GO:0006606
Vimu3g02038 1193 Pfam Calmodulin binding protein C-terminal domain 325 383 IPR046829 -
Vimu3g02038 1193 FunFam Importin subunit alpha 567 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02038 Vimu-Chr3 35273875 35282071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02038 51 385 Calmodulin-binding Proteins AT5G26920 42.229 5.71e-77 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02038 K15042 - var:108325503 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02038 3 35273875 35282071 Vimu3g02038 3 35273875 35282071 ECH
Vimu6g01900 6 17190157 17196247 Vimu3g02038 3 35273875 35282071 ECH
Vimu3g02038 3 35273875 35282071 Vimu6g01900 6 17190157 17196247 ECH
Vimu10g00136 10 792385 796787 Vimu3g02038 3 35273875 35282071 ECH
Vimu6g01900 6 17190157 17196247 Vimu3g02038 3 35273875 35282071 PCT