Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02035 ATGGGAAGCTGTAGCAGGAAGAAAAACCAAGATCTGGAGTTAGAGAGAGCTCGCTTAATCAGTTTAGCACTCGAATTCGGTTTCGACGAATCCTCCGCCAACAAATGCCTCCACCGTCTCATCGATCTATACGGAGAAGACGGTCGCGATTTCGTCACCGTCGAGCACTGCGGCGACGATTTTATCGCGACTCTAGCGGAGTCTATTCAGGCTACTGAAGATTGGGATGACCTTCAGGAAATGGAATCACAAGCGTTCGGAACCTTGACGCACGTGCTTGACAAAACCGTTGCTCCGGATGCCGATGCGGATAACGAGGACGCTTCGAGAAACTACATTAATGTTGTCGACGACTCGCCTCAACCGCAGAAACGCAAATGCCGCGCTAATGTAGTGGAGTTGGATTCGAGTGACGATGAGGATATTCACTGTAGTGTTCCGAGGGGAAAATCTGTGGATTACAGAAGTGGCATCACTCAAGGCTCGGTTTCATCAACTTCCAGCAAAATGCAATCCTTCTTTGCATCAAGGGATAAAAGTGGTACTCTCACTTATGAAGAATTGCAAGCTCTTGATGATATTGAATTGGCCAATGTTGTTATCTTTGGTAATAGTACATTTCGACCATTGCAGCATCAGGCATGTAAAGTAGCTTTGGCAAAGCAAGATTCCTTTATTCTTATGCCTACTGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACTCTTCAACCAGGTGTCACCGTAGTTGTCTCTCCATTACTCTCACTCATTCAGGATCAGATAATAACACTAAACTTCAAGTTTGGAATACCTGCTACTTTCTTAAATTCTCAACAAACTGCTTCCCAGGCCACAGCTGTGCTCCAAGAGCTAAGAAAAGACAAACCATCATGCAAACTTTTATATGTAACACCCGAGAGAATTGCTGGCAACCAATCGTTTCAGGAGATCCTGAAATGCATGCATCGGAAGTACTACAAGAGCATTCCATTCTCCAAAAATCACGGAGACCCTTTGAGTTCCAGTTTGGTAGAATTGGCACTGCGGGTCTTGAGTAACACAAATGGCCAGCTTTCAAGTAAAGATGAGCAAAATGGGTCAAACTCTAGCTTTGGTGTGCAAGCAGAACTTAAAACTGCTAGTGTAGCAAGTTATCCTACAACAGGGGATGGACTTGTTAAAGCTATCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGATTGGGATCTCTAAAGCAAAAGTTTCCAGATGTACCCGTCATGGCATTGACTGCCACTGCAACCCATGCAGTTCGTGAGGACATATTAAATGCTCTAAGAATTCCCCATGCACTCGTTCTTGAAAGAAGCTTTGACAGACCAAATTTGAAGTATGAAGTGATTGGTAAGACAAAGGAACCACTAAAGCAACTCGGACAGATACTAATTGATCGCTTCAGGAATCAGTGTGGAATTGTTTACTGCCTTTCGAAAAGTGAATGTGTTGAGGTCTCTAAATTTTTAAATGAGAAATGTAAGATCAAAACAGTGTATTACCATGCTGGCTTGGCTGCCCGGCAGAGAATAGTTGTTCAAAAGAAATGGCATGACGGGGAGGTCCATATTGTGTGTGCAACCATTGCTTTTGGAATGGGGATAGACAAACCTGATGTTCGCTTCGTCGTCCACAATACAATGTCAAAATCTATTGAAAGCTATTATCAAGAATCTGGAAGGGCCGGAAGAGATAATCTTCCTTCAGTTTGCATTGTTCTTTACCAAAAGAAGGATTTTAGTAGAGTTGTATGCATGATAAGAAATGGTCAGGGATATAAAAAGGAAAGTTTTAAGACAGCAATGGTTCAAGCCAAAAAGATGCAAGAGTACTGTGAAATAAAGGTTGAATGCCGGAGACAAACTTTACTCAAACACTTCGGGGAATCTTTTGATAGAAAATCTTGCAAGTATGGATCTAGCCCCTGTGATAACTGTATCAAGACTGTATTATGA 1998 0.4294 MGSCSRKKNQDLELERARLISLALEFGFDESSANKCLHRLIDLYGEDGRDFVTVEHCGDDFIATLAESIQATEDWDDLQEMESQAFGTLTHVLDKTVAPDADADNEDASRNYINVVDDSPQPQKRKCRANVVELDSSDDEDIHCSVPRGKSVDYRSGITQGSVSSTSSKMQSFFASRDKSGTLTYEELQALDDIELANVVIFGNSTFRPLQHQACKVALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNFKFGIPATFLNSQQTASQATAVLQELRKDKPSCKLLYVTPERIAGNQSFQEILKCMHRKYYKSIPFSKNHGDPLSSSLVELALRVLSNTNGQLSSKDEQNGSNSSFGVQAELKTASVASYPTTGDGLVKAIQWGHDFRPDYRGLGSLKQKFPDVPVMALTATATHAVREDILNALRIPHALVLERSFDRPNLKYEVIGKTKEPLKQLGQILIDRFRNQCGIVYCLSKSECVEVSKFLNEKCKIKTVYYHAGLAARQRIVVQKKWHDGEVHIVCATIAFGMGIDKPDVRFVVHNTMSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMIRNGQGYKKESFKTAMVQAKKMQEYCEIKVECRRQTLLKHFGESFDRKSCKYGSSPCDNCIKTVL 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02035 665 Pfam Helicase conserved C-terminal domain 473 579 IPR001650 -
Vimu3g02035 665 SMART helicmild6 498 580 IPR001650 -
Vimu3g02035 665 SMART ultradead3 203 464 IPR014001 -
Vimu3g02035 665 CDD DEXHc_RecQ 201 455 - -
Vimu3g02035 665 Pfam DEAD/DEAH box helicase 209 312 IPR011545 GO:0003676|GO:0005524
Vimu3g02035 665 Pfam RecQ zinc-binding 592 660 IPR032284 -
Vimu3g02035 665 Gene3D - 456 664 IPR027417 -
Vimu3g02035 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 311 IPR027417 -
Vimu3g02035 665 NCBIfam RecQ family ATP-dependent DNA helicase 399 663 IPR004589 GO:0004386|GO:0006310
Vimu3g02035 665 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 215 448 IPR014001 -
Vimu3g02035 665 PANTHER DNA HELICASE RECQ FAMILY MEMBER 190 660 - -
Vimu3g02035 665 FunFam ATP-dependent DNA helicase 456 663 - -
Vimu3g02035 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 454 660 IPR027417 -
Vimu3g02035 665 CDD SF2_C_RecQ 456 589 - -
Vimu3g02035 665 Gene3D - 397 455 IPR027417 -
Vimu3g02035 665 Gene3D - 165 331 IPR027417 -
Vimu3g02035 665 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 470 623 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02035 Vimu-Chr3 35239503 35245447 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02035 478 578 Eukaryotic Initiation Factors Gene Family AT5G11170 30.693 1.25e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02035 K10899 - cave:132172585 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02035 3 35239503 35245447 Vimu3g02035 3 35239503 35245447 ECH