Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02034 ATGGAGATTCACAGAAGACGTTTCAAGGGAACCTTTCTTAGCTTCTTTGACTGGAATGGTAAATATCAAAAGAAGAACCTTTTTCACGATCCTAAGTTGCCTGAAATTTCAAAGCAAGGAAAGGAAAACGTGGACAATTTGCCAAAGTCAGAGGTCAATAAGATGAAAATGAATGACAATGGAGCAAATCCTTGTAATAATGCAAGTTCTGATTTTGATTGTGCCATATCAATTAGTAGTGATGAAGGGTGTCAGACTAAAGCTCCGGGGTTACTAGCCAGACTCATGGGTTTGGATTCACTGCCAGTTTCAAATGTCTCTGAGCTCTCTTCATTATCCACTTCCTTATATGGCTCCAACTCTCTTGGATCTTCTCGTACTCCTGATGAGGATGTTCTTCACTCAACGGTTGACTATTGTTGTAATGTTGATTCGATAAACATGGGACTTAAGTCGGTGAAGTCTTCTTGGAGTGTCATGGAATCGAAAGAGAGAAATCCAGCCATGAAAAGATTTCAGACTGAAATGTTACCTCCAAGGTCTGCCAAAACCATTCCAGTTACTCACGACAAACTTCTGTCTCAACCTAAGCATGCAGCTCAAATTATGGAGGCAGCTGCCAAAATAATTGAGGTAAGTCCCCAGCCGTGTAAGAGGAACAGAATGTCTTCGGCTGGACCTTCATCTGTACCCTTAAGAGTTCTTGAGCTGAAAGAGAAATTGGAAGCTTCCCAACACGAGTCCAAATTCACAGGTAAGCACACTGCTAACCCTCTGAATGGCAAGCCTGGTGAGAGGAGAAATAGTTTATGTAAATCTACTCCAAGTTCAACAGGTTCAAGAGATTCAGAAAAAAACAGTTCTTGCCGGTTGCCAAGCAAAAGAAAATCTGCTTCGGTCGCAATTCCATCTAGAACCAATGTTCAGAGCTGTGATGAATTGACTTTGAATGGTAATAGGGGATGTGTGAAGCAGAAGGAACATAATGATATCAAATCAAACCAGTTGTCTCGGAGCCAGAAGAAACGAAGTACAGACCGAGCCAGAGTCATTCAGCAGAAAGCTTGTAATGGCCAGAATAGTAATGTGCTTGGGAAGAATAACCAAAAACTGTGTACTGAAACCACCAAAGGTAACCCGACTTCCAAGGCATACTCGCATAAACCAACACAAAATTGGTCTCCAGAAAGTTCTACTAGAGCAAAGAAGACCACAAAAAGGGGTGTTGTAAAAGCCAACACCGAGCCCAAAGGGTCAGACACAAGGGTAACAGGTGCTACCAAATCAGTTTCCAAAAGAAAGAGCATTTCCCAAAAGAAAAACTATATGAATAGGGTTGTTCACAATGAGGCAAGAGGCACTGATACTGCGGCTAATAATTATGAAAACAAGTCTATAAAATGCAATATTACAACTGACGGAAGTATTAACCAGGATGCATTTAGTATGAAAGGAAGCAATGGTGTGATTTCATTTATATTTACATCTCCTTTGAGAAGAAAAAGGCCTGAGTTACAGTCCTCCATTGAGAAAATGGTGGAAACAAGGAACAAAACTGATGTCAATTCTTGTAGCAATAATATGATCAATCCCAGAAAATCATCATTATCTCCTCCCAGGTTACATGTAATAGATGGTGAGGCTTTAAGTGTCCTTTTGGAGAGAAAGCTGCAAGAATTGACATCTAGAATTAACCCAACTCAATGCTCTGTGATGAAAGAATGGTCTTCTGCTGGTTTCGAAGACAGAAGTTTTCACCCCAACCTGGTTAGTAATAAATTGGACAGCAGGCATGACAATTGTTTGTCAAGTGATAGCATGGTGCTTAGTATGAATCAGCAACCACAGACATCAGAATCAATAGAAGGGCCTAGCTGCAGCAGCAACAGCGAAAGCAGAAATGAAAGTTACTTAGATAGTGCATATGGCAGCACAGTTTATTCTTCCATGCAAGATGAAGAGCAATCTGATTTTTCTCCAATGAATGAATCTCTGCCACTTGAAAACGAGGCCGAATGGTCTGAGCAAAGCTCTTGCATAGTGATGGGAGATGACATGGTTGCCATTGAACAATCAAGTATAATGTCAAATTCAGTAGAGTTTACAAGATTATCTAGGAACGTGGAATTTGATTACATAAAGGATATACTCTACAGTGCAGAGCTGATGACAGAAAATTTTTTGATGGGTGAGACAGATAAGATCATAATGCCAAATCTCTTTGATCTGTTGGAGACTAAGAGCACTGTGGCAGAAAGCTATGAAGAGTACTCTAAGATCGAGAGAAAGGTTATATTTGACACAGTGAGTGAATGCTTAGAGTTAAGATGTAGAAAAGTTTTTGTTGGAAGCTGCAAAGCAATGCCTAAATGGATGGCTTCAGTTCAGAAGAAGAGCTCTTTAGCTGAAGATTTGTACAAGGAAATGTTGAACCTTAGGAGCATGGAAGAATCAGTGGTGGAGGAACTAGTCTACAAGGACATGAATACTCCATGGGGTAGATGGCTTGAGTTTGACACTGAAGCATTTGAAGAAGGTTTAGAACTTGAGTTTGATGTTGTCACATGTTTGATTAACGAATTGGTTTCTGATTTGTTGCAGTTTTAA 2607 0.4016 MEIHRRRFKGTFLSFFDWNGKYQKKNLFHDPKLPEISKQGKENVDNLPKSEVNKMKMNDNGANPCNNASSDFDCAISISSDEGCQTKAPGLLARLMGLDSLPVSNVSELSSLSTSLYGSNSLGSSRTPDEDVLHSTVDYCCNVDSINMGLKSVKSSWSVMESKERNPAMKRFQTEMLPPRSAKTIPVTHDKLLSQPKHAAQIMEAAAKIIEVSPQPCKRNRMSSAGPSSVPLRVLELKEKLEASQHESKFTGKHTANPLNGKPGERRNSLCKSTPSSTGSRDSEKNSSCRLPSKRKSASVAIPSRTNVQSCDELTLNGNRGCVKQKEHNDIKSNQLSRSQKKRSTDRARVIQQKACNGQNSNVLGKNNQKLCTETTKGNPTSKAYSHKPTQNWSPESSTRAKKTTKRGVVKANTEPKGSDTRVTGATKSVSKRKSISQKKNYMNRVVHNEARGTDTAANNYENKSIKCNITTDGSINQDAFSMKGSNGVISFIFTSPLRRKRPELQSSIEKMVETRNKTDVNSCSNNMINPRKSSLSPPRLHVIDGEALSVLLERKLQELTSRINPTQCSVMKEWSSAGFEDRSFHPNLVSNKLDSRHDNCLSSDSMVLSMNQQPQTSESIEGPSCSSNSESRNESYLDSAYGSTVYSSMQDEEQSDFSPMNESLPLENEAEWSEQSSCIVMGDDMVAIEQSSIMSNSVEFTRLSRNVEFDYIKDILYSAELMTENFLMGETDKIIMPNLFDLLETKSTVAESYEEYSKIERKVIFDTVSECLELRCRKVFVGSCKAMPKWMASVQKKSSLAEDLYKEMLNLRSMEESVVEELVYKDMNTPWGRWLEFDTEAFEEGLELEFDVVTCLINELVSDLLQF 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02034 868 MobiDBLite consensus disorder prediction 417 432 - -
Vimu3g02034 868 Pfam DUF761-associated sequence motif 80 107 IPR032795 -
Vimu3g02034 868 MobiDBLite consensus disorder prediction 243 302 - -
Vimu3g02034 868 MobiDBLite consensus disorder prediction 324 348 - -
Vimu3g02034 868 MobiDBLite consensus disorder prediction 610 635 - -
Vimu3g02034 868 Pfam Domain of unknown function (DUF4378) 709 860 IPR025486 -
Vimu3g02034 868 MobiDBLite consensus disorder prediction 374 399 - -
Vimu3g02034 868 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 2 864 - -
Vimu3g02034 868 MobiDBLite consensus disorder prediction 267 286 - -
Vimu3g02034 868 MobiDBLite consensus disorder prediction 374 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02034 Vimu-Chr3 35226676 35230141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02034 3 866 TRM (TON1 Recruiting Motif) Superfamily AT5G26910 29.610 1.73e-76 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02034 - - vra:106771019 1611.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02034 3 35226676 35230141 Vimu3g02034 3 35226676 35230141 ECH
Vimu6g01913 6 17259353 17261228 Vimu3g02034 3 35226676 35230141 ECH
Vimu6g01913 6 17259353 17261228 Vimu3g02034 3 35226676 35230141 PCT