Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02019 ATGGAAAACTTTTACAAGCTCAACTCCCTCCTATCTTGTACCGAGGATGTTGTTAGAGGAGTCAACGTCAGCGTTTCCGCCGCCGCCGCATCTGAATTGAATCTAGGACTTGTGGCCAATAACTTCCTTCAGCTAGAAGAGCCAGAAAGTTCCGATATGTCGGAACGGTTCATCAAGACCCAGATCGCCACTCACCCACTTTATCCAAATCTAGTATCTGCTTACATAGAATGCCGAAAGGTTGGAGCACCGCCAGAACTTGCTTCACTTCTTGAAGAAATAGCCCGTGAAAGCCACCCAACGCATGCTCTTCGTGAGATAGGAGATGATCCCGAGCTTGACGAGTTCATGGAATCATACTGCGAAGTTCTTCATAGATACAAGCAGGAGTTGTCCAAGCCATTCGACGAAGCGACCTTGTTTTTGTGTAGTATCGAATCACAACTCAACAATCTTTGTAAGGGAACACTTGCATTGCCACTGGATAACAACCGCTCAGATGAGGCGGCTGGAACATCAGAAGATGAATTGAGCTGGGAGAAGATGGAAGCAGTGGAAGGTGTCGAATCTTCTGGGTCTCGTCCCGGTGATCAAGAGCTTAAAGAAATGCTCCTTCGTAAGTATGGTGGTTATCTTAGCAGCTTAAGAAAGGAATTTTTGAAGAAAAGGAAAAAGGGTAAACTTCCAAAGGAGGCAAGGAGGATACTCTTAGACTGGTGGAGCACTCACTATAGGTGGCCTTATCCTACGGAGGAGGAGAAAGTGCAACTATCAGAAATGACAGGACTTGATCAAAAGCAGATAAACAATTGGTTCATCAACCAAAGGAAACGGCATTGGAAACCATCTGAAGACATGCGATTTGCGATTATGGATGGTGTAAGTGGCAGCGCCATAGGTAGAGGACCTATGTAG 915 0.4579 MENFYKLNSLLSCTEDVVRGVNVSVSAAAASELNLGLVANNFLQLEEPESSDMSERFIKTQIATHPLYPNLVSAYIECRKVGAPPELASLLEEIARESHPTHALREIGDDPELDEFMESYCEVLHRYKQELSKPFDEATLFLCSIESQLNNLCKGTLALPLDNNRSDEAAGTSEDELSWEKMEAVEGVESSGSRPGDQELKEMLLRKYGGYLSSLRKEFLKKRKKGKLPKEARRILLDWWSTHYRWPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRHWKPSEDMRFAIMDGVSGSAIGRGPM 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02019 304 Pfam Homeobox KN domain 239 278 IPR008422 GO:0003677|GO:0006355
Vimu3g02019 304 SUPERFAMILY Homeodomain-like 221 294 IPR009057 -
Vimu3g02019 304 CDD homeodomain 231 283 IPR001356 GO:0003677
Vimu3g02019 304 SMART HOX_1 221 286 IPR001356 GO:0003677
Vimu3g02019 304 SMART ELK_2 199 220 IPR005539 GO:0003677
Vimu3g02019 304 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 60 289 - -
Vimu3g02019 304 ProSitePatterns 'Homeobox' domain signature. 257 280 IPR017970 GO:0000981|GO:0006355
Vimu3g02019 304 ProSiteProfiles ELK domain profile. 199 219 IPR005539 GO:0003677
Vimu3g02019 304 ProSiteProfiles 'Homeobox' domain profile. 219 282 IPR001356 GO:0003677
Vimu3g02019 304 Pfam KNOX1 domain 58 99 IPR005540 GO:0003677|GO:0005634
Vimu3g02019 304 Gene3D - 217 289 - -
Vimu3g02019 304 SMART KNOX1_2 56 100 IPR005540 GO:0003677|GO:0005634
Vimu3g02019 304 Pfam ELK domain 199 220 IPR005539 GO:0003677
Vimu3g02019 304 SMART KNOX2_2 103 154 IPR005541 GO:0003677|GO:0005634
Vimu3g02019 304 Pfam KNOX2 domain 107 153 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02019 Vimu-Chr3 35066466 35070459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02019 52 297 Homeobox Transcription Factor Family AT1G23380 55.294 5.49e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vimu3g02019 KNOX2 5.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02019 - - gmx:102660463 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02019 3 35066466 35070459 Vimu3g02019 3 35066466 35070459 ECH
Vimu6g01923 6 17314432 17318525 Vimu3g02019 3 35066466 35070459 PCT