Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02012 ATGTTTAAAAGAAGGAGATCAAATTGGAAATACCTTAGAAAAATAACCACGTTGGTTTTAACCTTCTTTCTTTCTATTCTTTCTATTGCTGTCATTGTTATTTCTTCTTCAGGGATTTGTAGAGCAGTGGAGTGTGGTGGCCCGCAAATTTCAAGCACAATCGTAGTTGGTAGCAACTCATCAAATTTCACATCAATTCAAGAAGCCATTGATTCAATACCATCAAATAACTCCAAATGGGTAAAAATTCAGATAAATGGTGGCACATATAACATCCCAGTGGATAAGCCATGCATCTTTATCAAAGGGCAAGGGGCAAATGTTACCACCATTACATACGATGACCACTCGGCAACAAATACTAGTGCCACATTCACTTCCTTTTCAAACAATGTTGTTCTATCAGATATTACTTTTCAGAACTCGTACGGTTTGGAAATGTTAGAAAATTTGCTAATACATAAGATCAGTTATGGAATAAGGATTCCATCGTTGGCTGCAAGAATAGCTGGAGACAAAAATACTGTTTGGGATGAATTAGGTCGTCATTATTTCAAAAATTGCATGATTGAAGGTGCTGTGGACTTCATATTTGGTGATGGACAATCCTACTACCAGGATTGTGTGTTGAATGCAACTTCCTTGGGTTCCATAACAGCACAAGCACGCAATATAGGTAGTGAGCCATCTGGTTTTGTGTTTGAAGGAGGTTCTGTGATAGGTAACAGTAATGGAGACTCATTATTAGGAAGAGGCTATCGTCGTTGCTCTAGGGTTATATTTTATAAAATGAACCTTAGTAGTGTCATTCGGCCTGTAGGATGGGATGCTTGGAAGTCCAAACATTTAATGTCTTTATTATCTTCAACTTATGCTAACATGTTCTACAAATTGTCGAAAAATTTATGCAGGAGTTGTCTTTTCTTCTCTGAGATTCAATGTACAGGACCAGGTTCTGATACTTCTCGACGTCTTCCTTGGGAAAAGAATTTGACAGACTCAGATTTTAACAACAAATTTTCAATTCCAGTGTTCATCAATCAAGATGACTGGCTCTCACAATTACCAATACAGAAATAG 1080 0.3722 MFKRRRSNWKYLRKITTLVLTFFLSILSIAVIVISSSGICRAVECGGPQISSTIVVGSNSSNFTSIQEAIDSIPSNNSKWVKIQINGGTYNIPVDKPCIFIKGQGANVTTITYDDHSATNTSATFTSFSNNVVLSDITFQNSYGLEMLENLLIHKISYGIRIPSLAARIAGDKNTVWDELGRHYFKNCMIEGAVDFIFGDGQSYYQDCVLNATSLGSITAQARNIGSEPSGFVFEGGSVIGNSNGDSLLGRGYRRCSRVIFYKMNLSSVIRPVGWDAWKSKHLMSLLSSTYANMFYKLSKNLCRSCLFFSEIQCTGPGSDTSRRLPWEKNLTDSDFNNKFSIPVFINQDDWLSQLPIQK 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02012 359 ProSitePatterns Pectinesterase signature 2. 190 199 IPR033131 -
Vimu3g02012 359 Gene3D - 48 359 IPR012334 -
Vimu3g02012 359 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 51 353 - -
Vimu3g02012 359 Pfam Pectinesterase 54 348 IPR000070 GO:0030599|GO:0042545
Vimu3g02012 359 SUPERFAMILY Pectin lyase-like 50 354 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02012 Vimu-Chr3 34994950 34997383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02012 19 281 Carbohydrate Esterase AT2G19150 37.847 1.12e-57 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02012 - - vun:114192590 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02012 3 34994950 34997383 Vimu3g02012 3 34994950 34997383 ECH