Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02011 ATGGAGAACAAAGAGCAGATAATACTTCCATTGCCATCGGAGACCCATCTCAAGGACCTTCCTAATGTTTCCTCCACCCCAAGGCCTGTTGGGTCCCACAAAGGGCACTGTTCTCCGGGTGATGACTCCGACAGCTTCTATGATAAACTCGTTGAGTTGTTGGAGTCTTCTGGACTCACTCTCATTTTCAATGTTCGAGAAACACTGCTGGACTTGTACCTGTTTTACTTGGAGGTGACAAGAAGAGGAGGATATCACCAGGTTGGTCGAGAAAGGAAGTGGGGTGAAGTTGTGATTGCCCTGAAATTGGAAGGGAATAGTGTGAACTTATGTGCTCAAGTTGAAAGCCTTTACTCACATCTTCTCTACCAGTTTGAGCAATTGTACTTCTACAGGCGTCCTGAAAAGCTAGCTTTCCGATCTGCCAGCAACAAAGAAGAAGGTCCGTTTAGGAAGAAGAGGATTTCAACTGCGAGTTTGCCTCATATGATGGATAGTAAAGATGGTGAGAAGGCCACAGAAATTTCCAAGCAATACTCTTGCCACATGACAGCTGGGGCTGGGTATGTGCAACAGCCTGTGCTTTTACCAACACCTCCGAAAGAAAAGAAGAAACGCCGAGGTGCCCCGGTGGGACGAAAGACTGCATATCAGATATTCCTCAAGCATGAATGTGCCCGGTTGAAAAGTTGCAATGAGGTCTTGGATGGAAAAATACTGAGTATGGCTATTCATTCATGGAGGACCATGTCTGAAACTGAGAAACAGCCATATGTGGAGGAAAGCAAGAAGAACAAAGAAGAAATTAAGGAAGCAATGGTTAGACGCAGTAAACAGCAGAGCACCCAAGATACCAGTCAAGAGAAGTGGTCTAGTATTTGTGGTGATTACCATGTAACTTTGCAACCTGAAGCAGATGTAGCTCTTAAAATGACTGAAAAAGCACCAATGGATCCTTCATTTCAGATGGATTGGGATGGTAATTGTTCACTTGATTTTGCAACAAGGGAATCCGAGTAA 1020 0.4461 MENKEQIILPLPSETHLKDLPNVSSTPRPVGSHKGHCSPGDDSDSFYDKLVELLESSGLTLIFNVRETLLDLYLFYLEVTRRGGYHQVGRERKWGEVVIALKLEGNSVNLCAQVESLYSHLLYQFEQLYFYRRPEKLAFRSASNKEEGPFRKKRISTASLPHMMDSKDGEKATEISKQYSCHMTAGAGYVQQPVLLPTPPKEKKKRRGAPVGRKTAYQIFLKHECARLKSCNEVLDGKILSMAIHSWRTMSETEKQPYVEESKKNKEEIKEAMVRRSKQQSTQDTSQEKWSSICGDYHVTLQPEADVALKMTEKAPMDPSFQMDWDGNCSLDFATRESE 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02011 339 SUPERFAMILY ARID-like 42 136 IPR036431 GO:0003677
Vimu3g02011 339 SMART bright_3 41 131 IPR001606 GO:0003677
Vimu3g02011 339 MobiDBLite consensus disorder prediction 21 40 - -
Vimu3g02011 339 Gene3D - 34 148 IPR036431 GO:0003677
Vimu3g02011 339 SMART ARID_2 37 126 - -
Vimu3g02011 339 CDD HMG-box_SF 214 268 - -
Vimu3g02011 339 ProSiteProfiles ARID domain profile. 40 130 IPR001606 GO:0003677
Vimu3g02011 339 SUPERFAMILY HMG-box 193 273 IPR036910 -
Vimu3g02011 339 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 20 287 - -
Vimu3g02011 339 Gene3D High mobility group box domain 199 275 IPR036910 -
Vimu3g02011 339 Pfam HMG-box domain 212 274 IPR009071 -
Vimu3g02011 339 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 210 277 IPR009071 -
Vimu3g02011 339 Pfam ARID/BRIGHT DNA binding domain 43 126 IPR001606 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02011 42 274 ARID Transcription Factor Family AT3G13350 23.221 6.24e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vimu3g02011 ARID 1.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02011 - - var:108325455 633.639