Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02010 CTTGAACTCCTTTTATACTCTTTCTCTTCTTCTATTTTCTTCCCCCACTTGGCTTCCAACACCATCAACTTCTTCTTCACGGTTTCCTTCAAATTCTTCTTCTCTTTTCACCTCAATAGACAAATCATTCGATTGCAATTATCTATGGAGTCTTTTGAGCCCAACGTAGATTCAAGTAATTCAGAAACGTTGCGAGAATCTAATCAAAAGAAGCGAAGGAAAATCGGAGACAACGCCGCCGATCACAATTCCGCCAACGCTGTCCCTTGGAGATCCGAGGCCGAGCAACGGATCTACTCTCGCCGCCTCGTCGAGGCTCTCCGCCGGACTCCGTCATCGGTGGCCAGGCCATCGGCCGCCGGCCAGGTCCGCGAGACCGCTGACCGAATTCTCGCCGCTACCGCAAGAGGCCGAACGCGGTGGAGCCGCGCGATTCTCGGCCGGTGGAGGAAGCTCCGCACGCAGCACAAGAAGGCGAAGAAGACATCGTCCACCGGATTGAAGAGAACGAGGATCAACGGCGGAGAGAGGAGGAACCGGTTACCGGCTGTGCAGAAGAAAGCGCGCGTTCTCAGCCGGTTGGTTCCCGGTTGCCGGAAGGTCTCGTTCCCAAACCTTCTGGAAGAAGCCACGGACTATATCTCCGCCTTGGAGATGCAAGTACGAACCATGACGGCTCTAGCAGAATTACTCTCCGGCGGCGCTGCGGCTGGTCTCGACGGTGGCGCGTTGAGTTGA 738 0.5515 LELLLYSFSSSIFFPHLASNTINFFFTVSFKFFFSFHLNRQIIRLQLSMESFEPNVDSSNSETLRESNQKKRRKIGDNAADHNSANAVPWRSEAEQRIYSRRLVEALRRTPSSVARPSAAGQVRETADRILAATARGRTRWSRAILGRWRKLRTQHKKAKKTSSTGLKRTRINGGERRNRLPAVQKKARVLSRLVPGCRKVSFPNLLEEATDYISALEMQVRTMTALAELLSGGAAAGLDGGALS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02010 245 MobiDBLite consensus disorder prediction 64 79 - -
Vimu3g02010 245 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 91 231 IPR044660 GO:0006355
Vimu3g02010 245 CDD bHLH_AtIBH1_like 173 228 IPR044549 GO:0006355
Vimu3g02010 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Vimu3g02010 245 MobiDBLite consensus disorder prediction 54 87 - -
Vimu3g02010 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 233 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02010 Vimu-Chr3 34974457 34976226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02010 49 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 44.560 3.63e-37 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02010 - - gmx:100807196 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02010 3 34974457 34976226 Vimu3g02010 3 34974457 34976226 ECH
Vimu6g01926 6 17361297 17363028 Vimu3g02010 3 34974457 34976226 ECH
Vimu6g01926 6 17361297 17363028 Vimu3g02010 3 34974457 34976226 PCT