Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02006 ATGTCCGAAGACAAAGACAGGGAGCAGTACGGAGTGCTCCTTTATTACAATTACGCTGAAATTGCAGACCTCAACCACCTCCTCACCTTCTACAATTCCAACTGCTCCTCCCTCAACCTACGAGGTCGTGTTCGCCTTTCAACCCATGGTGTCAATGTCACTGTTGGTGGCAATTTGTCGTCTCTCGAGTCCCACATCGAAGCGCTCAAAGCCCACAACTCCTTGTTTCACCGCACTGATTTTAAGCTCGCCACGTGTCATCACCCACTAAACGACAAAGTTGCCCGGGAGTGTGGCTTCACTTCTCTCTCTATTCGGATTGTGGATGAACTTGTTACTCTTAGTTCTCATCCACTGTTAAAAGCGCCTGATATCTCCAATGCTGGAATGCATCTATCTGCACTTGACTTCCATTCTTCCCTTCACAATGCCTACAAGGAGAGTCCAGAAAATGGCCTTGTTTTACTTGATGCAAGGAATCTGTATGAAACAAGGATTGGGAAGTTTCACGTGCCAAATGTTGAGACTTTGGATCCACAAGTTAGGCAGTACAGTGATTTGTCCTCGTGGATAGATGATAATGGTGACCGGTTGAAAGGAAAAAATATTTTCATGTATTGTACTGGCGGAATTCGGTGTGAGATGGCATCAGCATATATTAAGTCTAAAGGTGCCGGTTTTGAGAATGTGTTTCAGTTATTTGGTGGCATACAACGGTATTTGGAGCAATTCCCAGATGGTGGTTTTTTCAAAGGAAAGAATTTTGTATTTGACCACCGGATATCAGTTGGAAGTTCAGATGCTAATATTATTGGTACCTGCCTTACGTGTCAATGTTCGTTTGATGATTACACTTCTCGCTGCCGGTGTACTTATTGCAGAATGCTTGTTTTGGTGTGCCGTAGTTGTGAGAGTGAATCTACCGTGTATGTTTGTGAGCTATGTCAGAAACAGGGCAAGCCCGAGTCAGCACAGTTAATTGAAATTGGAGAATCAAAAACATCATTGTCAGATGCCGAGTTCAACAACTTTTCTTCAGATTTGCCTCGAGTGCCCAGGGGAGATGATCCAAGGACCTCAAGAAAACTGAGAATCTTGTGCTTGCATGGGTTTCGGCAGAACGCATCCAGTTTCAAAGGCAGAACAGCATCATTAGCCAAGAAACTAAAGAAAATCACTGAATTTGTTTTTGTTGATGCTCCCCATGAATTGCCATTCATTTACCAAACCCCCATGTTTGAGTCAAATGAAAATTGTGCATCATCATCATTGCCATCTAGTCCTCCACCACCATTGGAGAATTGCAAGAAGAAGTTTGCATGGTTTGTGGCACCCAACTTTGATGGAAGCAGTGGTGTTGACTGGAAGGTAGCAGATGGCCCATTTGATCCACTTCAATACCAGCAGCAAACTGTTGGATATGATATTTCACTATCACACTTGAAGAATGTCTTTTCCCAGGAAGGACCATTTGATGGAATCTTGGGATTTTCACAGGGAGCAGCAATGGCTGCCTTAATCTCTGCACTACAAGAAGAGCTGAAAGGTGAAATGGACTTCAAATTTGTAGTCTTGTGCTCTGGCTTTGCTCTCCGGATGAAAGCCATGGAGTGTGGTCCTATCAAGTGTCCTTCTCTTCATATTTTTGGTAATGAACATGGTAAAGACAGACAGATAGCTAACCAAACAAGCAAGGAACTTGCTTCTCTATATGAGGGTGATTGTTCTGCGATAGTTGAGCATGATAATGGTCATATAATTCCTACCCGGTCCCCTTACATCGATGAGATCAAGAATTTTCTTAATCGCTTTCTGTAG 1818 0.4329 MSEDKDREQYGVLLYYNYAEIADLNHLLTFYNSNCSSLNLRGRVRLSTHGVNVTVGGNLSSLESHIEALKAHNSLFHRTDFKLATCHHPLNDKVARECGFTSLSIRIVDELVTLSSHPLLKAPDISNAGMHLSALDFHSSLHNAYKESPENGLVLLDARNLYETRIGKFHVPNVETLDPQVRQYSDLSSWIDDNGDRLKGKNIFMYCTGGIRCEMASAYIKSKGAGFENVFQLFGGIQRYLEQFPDGGFFKGKNFVFDHRISVGSSDANIIGTCLTCQCSFDDYTSRCRCTYCRMLVLVCRSCESESTVYVCELCQKQGKPESAQLIEIGESKTSLSDAEFNNFSSDLPRVPRGDDPRTSRKLRILCLHGFRQNASSFKGRTASLAKKLKKITEFVFVDAPHELPFIYQTPMFESNENCASSSLPSSPPPPLENCKKKFAWFVAPNFDGSSGVDWKVADGPFDPLQYQQQTVGYDISLSHLKNVFSQEGPFDGILGFSQGAAMAALISALQEELKGEMDFKFVVLCSGFALRMKAMECGPIKCPSLHIFGNEHGKDRQIANQTSKELASLYEGDCSAIVEHDNGHIIPTRSPYIDEIKNFLNRFL 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02006 605 FunFam Rhodanese-like domain-containing protein 6 1 112 - -
Vimu3g02006 605 SMART rhod_4 139 246 IPR001763 -
Vimu3g02006 605 SUPERFAMILY alpha/beta-Hydrolases 359 605 IPR029058 -
Vimu3g02006 605 FunFam esterase OVCA2 isoform X6 359 605 - -
Vimu3g02006 605 Gene3D - 1 112 - -
Vimu3g02006 605 ProSiteProfiles Rhodanese domain profile. 149 249 IPR001763 -
Vimu3g02006 605 Gene3D alpha/beta hydrolase 359 605 IPR029058 -
Vimu3g02006 605 Gene3D - 121 278 IPR036873 -
Vimu3g02006 605 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 3 604 IPR020936 -
Vimu3g02006 605 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 126 263 IPR036873 -
Vimu3g02006 605 FunFam Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 119 277 - -
Vimu3g02006 605 Pfam Rhodanase C-terminal 251 316 IPR022111 -
Vimu3g02006 605 Pfam UPF0176 acylphosphatase like domain 11 110 IPR040503 -
Vimu3g02006 605 Pfam Serine hydrolase (FSH1) 361 596 IPR005645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02006 Vimu-Chr3 34940716 34946302 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02006 5 605 Sulfurtransferasese or Rhodanese AT1G09280 63.802 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02006 - - gmx:100786152 1066.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02006 3 34940716 34946302 Vimu3g02006 3 34940716 34946302 ECH