Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02003 ATGGTGCCGAAGCCTAAAACCGAAGGTGCCTCGGCTTCCGCCGCTTTTTTCAAACCCGGTACTGTGGTGGAAGTTAGCTCTGAGGATGAAGGCTTCCGTGGCTCCTGGTTTTCCGGCACCATCATCCGCCATCTTGCTTCTGACAGGTTCCTGGTAGAGTACCACAACCTGATGGCAGACGATAAAAGCTCAAAGCATTTGAGAGAACTCTTGCATATACGTCAACTGCGGCCCATTCTCCCACCGGAGACAGGCCAAATATTCAAATTTGGGGACGAGGTTGACGCATTCTACAACGACGGTTGGTGGGAGGGCTATATAACTGAGGAATTAGAGAATGACAAATTTGCAGTGTATTTCAGGGCGTCCAAGGAGCAATTAGTGTTTTCCAAAGAACAACTCCGAATCCACCGAGAATGGTTCGATCACGAATGGGTCCCACCACTCCAACAAAAAAATGATGAATTTAACGAAGCTGCAAAGCCAGATGAATTTGTCCAAGGAGCTATAGTAGAGGTTAGCAGTGATGAAGATGGGTTCAGTGGAGCTTGGTTTGAAGCCACTATTGTTGAGATAAAGGGAAATGACAAGTTCGTTGTTGAGTACCAGACTCTGTTAGCTGATGATGATTCTAATCTTTTGAAAGAAGAGATTGATGTCTTTCACATAAGGCCTCCTCCGCCCAATACTAATGGTGACGGTCAATTCAAGCTTCTTGACGAAGTCGATGCCCTGTACAATGACGGTTGGTGGGTGGGTGTGATTTCAAAAGTTCTTGCTGACTCCAAGTATGTGATTTACTTCAGGTCTTCTAATGAGGAACTAGAGTTTCATCACTCCCATTTGAGGCTGCATCAGGACTGGATTCATGGAAAATGGGTTATGCCTTCTAAGGTATGTACGGAATTTGCTGAAACTCTGTGA 924 0.4567 MVPKPKTEGASASAAFFKPGTVVEVSSEDEGFRGSWFSGTIIRHLASDRFLVEYHNLMADDKSSKHLRELLHIRQLRPILPPETGQIFKFGDEVDAFYNDGWWEGYITEELENDKFAVYFRASKEQLVFSKEQLRIHREWFDHEWVPPLQQKNDEFNEAAKPDEFVQGAIVEVSSDEDGFSGAWFEATIVEIKGNDKFVVEYQTLLADDDSNLLKEEIDVFHIRPPPPNTNGDGQFKLLDEVDALYNDGWWVGVISKVLADSKYVIYFRSSNEELEFHHSHLRLHQDWIHGKWVMPSKVCTEFAETL 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02003 307 CDD Tudor_Agenet_AtDUF_rpt2_4 238 284 - -
Vimu3g02003 307 SMART agenet_At_2 234 290 IPR014002 -
Vimu3g02003 307 SMART agenet_At_2 86 142 IPR014002 -
Vimu3g02003 307 SMART agenet_At_2 15 84 IPR014002 -
Vimu3g02003 307 SMART agenet_At_2 163 231 IPR014002 -
Vimu3g02003 307 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 161 298 - -
Vimu3g02003 307 CDD Tudor_Agenet_AtDUF_rpt1_3 165 228 - -
Vimu3g02003 307 CDD Tudor_Agenet_AtDUF_rpt2_4 91 136 - -
Vimu3g02003 307 Gene3D - 146 236 - -
Vimu3g02003 307 CDD Tudor_Agenet_AtDUF_rpt1_3 17 81 - -
Vimu3g02003 307 Pfam Agenet domain 91 149 IPR008395 -
Vimu3g02003 307 Pfam Agenet domain 20 81 IPR008395 -
Vimu3g02003 307 Pfam Agenet domain 168 228 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02003 Vimu-Chr3 34897951 34899266 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02003 175 288 PHD Transcription Factor Family AT5G58610 27.612 5.70e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02003 - - vum:124823040 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02003 3 34897951 34899266 Vimu3g02003 3 34897951 34899266 ECH