Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02000 ATGGCGTTTGTTAAGGCTCAGAAATCAAGGGCCTACTTCAAGAGATATCAAGTGAAGTTTAAAAGAAGAAGAGAGGGGAAAACCGATTACCGAGCCAGGATTCGGTTGATTAACCAGGATAAGAACAAATACAACACTCCAAAATATCGCTTTGTGACCAACAAGGACGTCATCGCTCAAATAACATCTGCTAGCATTGCTGGCGATATTGTCCTCGCTGCAGCATATGCACATGAGTTGCCACACTATGGTCTTGAAGTAGGCCTTACAAATTATGCTGCAGCTTATTGCACTGGACTCTTATTGGCCCGTCGAGTACTTAAAAAGCTTGAAATGGACGAAGAATATGAAGGAAATGTCGAGGCCACTGGAGAGGATTATTCTGTTGAACCCGCTGATACCAGGAGACCATTCCGTGCTCTCCTTGATGTTGGTCTTATCAGGACTACAACGGGAAATCGTGTCTTTGGTGCCCTTAAGGGAGCTTTGGATGGTGGTTTGGATATTCCTCATAGTGACAAAAGGTTTGCTGGATTTGATAAGGATAAGAAGGAGCTTGATGCTGATGTTCACCGCAAATATGTCTTTGGTGGACATGTTGCTTCTTATATGAAGAGCCTGATTGAAGATGAGCCAGAAAAATACCAGACACACTTCAGTGAGTATATCAAGCGTGGAATAGAGCCTGATGGTCTGGAGGAGCTCTACAAGAAAGTTCATGCCGCCATCCGTGCAGATCCTACTTTCAAGAAATCTGAGAAAGAACCACCAAAGGAGCACAAGAGGTACAACCTGAAGAAGCTTACTTATGAAGAGAGGAAAGCCAAGTTGGTTGCACGCTTGCAGGCTCTGAACTCTGCTGCTGATGTCGATGATGATGATGATGAGTGA 891 0.4433 MAFVKAQKSRAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVTNKDVIAQITSASIAGDIVLAAAYAHELPHYGLEVGLTNYAAAYCTGLLLARRVLKKLEMDEEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKDKKELDADVHRKYVFGGHVASYMKSLIEDEPEKYQTHFSEYIKRGIEPDGLEELYKKVHAAIRADPTFKKSEKEPPKEHKRYNLKKLTYEERKAKLVARLQALNSAADVDDDDDE 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02000 296 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 172 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu3g02000 296 Pfam Ribosomal L18 C-terminal region 232 285 IPR025607 -
Vimu3g02000 296 FunFam 60S ribosomal protein L5 1 288 - -
Vimu3g02000 296 Hamap 50S ribosomal protein L18 [rplR]. 14 243 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu3g02000 296 Gene3D - 1 288 - -
Vimu3g02000 296 CDD Ribosomal_L18_L5e 41 167 - -
Vimu3g02000 296 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 287 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu3g02000 296 SUPERFAMILY Translational machinery components 11 249 - -
Vimu3g02000 296 PRINTS Ribosomal protein L5 signature 81 101 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu3g02000 296 PRINTS Ribosomal protein L5 signature 203 223 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu3g02000 296 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu3g02000 296 PRINTS Ribosomal protein L5 signature 161 180 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu3g02000 296 PRINTS Ribosomal protein L5 signature 141 160 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu3g02000 296 MobiDBLite consensus disorder prediction 247 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02000 Vimu-Chr3 34879752 34881930 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02000 1 288 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 80.756 3.65e-178 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02000 K02932 - gmx:100805868 516.153