Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01995 ATGGGTGGTAGATTTATTCCACTCTTGGCCATGATTGTTGTACAATTGAGTTATGCAGGAATGAATATTTCCTCAAAGCTTGCCATACAATCTGGCATGCACCCTCTTGTCCTTGTTGCTTATCGTCAAATTTTTGCCACTTTCTCCTTAGCTCCTTTTGCTTATTGCTTTGAACGGAATACGGCTCCCCCAATGACAAAACGAATTGCGTTGCAGATATTATTATCTTCCTTAACAGGAATTACAGGAAATCAGATGCTATATTTCCTGGGTCTTAAATATTCAACTGCTACAATTGCATGTGCACTAAACAACTTGCTCCCAGCATTCACTTTCGTTCTTGCAGTTCTCTTCGGGATCAAGACCAAGGCTGGGGTAGCGAAGGTGTTTGGGACAATCCTTAGTGTGGGTGGAGCAGTGGTTCTATCATTTTACCATGGAAAACTCCTTGGTCTAGGTGAGTCAAAAATTCAATGGAAATATGCTGAGGAAATGGAAACAAGAGCCTCTTCTCACGGTGAAACAAACTTGCTTCTGGGTCCTGTTGCTGTAATTTGTAGCGCTCTTGTTTGGGCAGTATGGTTCATAATTCAAGCAAACATAAGCAAGAGCTACCCAGTTCCTTTTACCAGCACTTTCTACATGTGTTTGATGGCAAGCATTCAGTGTGTGGCCATTGCCTTGTCTGTTGAACACCAGGCATCAGCTTGGTCACTGCAGAGTACAATAAGACTTACCTCTGCACTTTATGCGGGAACTATTTCAACTGGGCTAACGTATTCGCTCCTCTCGTGGTCTATCGAGAAGAAAGGTCCTCTCTATGCGTCTGTGTTCTCCCCTCTGCAGCTTGTCATCATTGCTGTTGTTAGCTGGGCACTACTGCACGAAAAATTATACATTGGCACTGCCATAGGGTCTCTGGTGATAGTGTTTGGGCTGTATTTTGTGTTGTTGGGAAAGAACAAAGATGTGGATGAGAATGACGGTGTTGATGAGATAACGGAGGCAATGGAGGATGATGCGAAAGACCTGGAATTGCAACCCTATAATCCTTTCAACGGTAACGGAAAGCATCATAAAGAAGATGATAAAAGGAAAGAGAAGGTGACAGGCAGAGGATTCGACGCAGATTAG 1134 0.4347 MGGRFIPLLAMIVVQLSYAGMNISSKLAIQSGMHPLVLVAYRQIFATFSLAPFAYCFERNTAPPMTKRIALQILLSSLTGITGNQMLYFLGLKYSTATIACALNNLLPAFTFVLAVLFGIKTKAGVAKVFGTILSVGGAVVLSFYHGKLLGLGESKIQWKYAEEMETRASSHGETNLLLGPVAVICSALVWAVWFIIQANISKSYPVPFTSTFYMCLMASIQCVAIALSVEHQASAWSLQSTIRLTSALYAGTISTGLTYSLLSWSIEKKGPLYASVFSPLQLVIIAVVSWALLHEKLYIGTAIGSLVIVFGLYFVLLGKNKDVDENDGVDEITEAMEDDAKDLELQPYNPFNGNGKHHKEDDKRKEKVTGRGFDAD 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01995 377 MobiDBLite consensus disorder prediction 339 377 - -
Vimu3g01995 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 41 145 - -
Vimu3g01995 377 PANTHER WAT1-RELATED PROTEIN 7 324 IPR030184 GO:0016020|GO:0022857
Vimu3g01995 377 MobiDBLite consensus disorder prediction 355 377 - -
Vimu3g01995 377 Pfam EamA-like transporter family 179 317 IPR000620 GO:0016020
Vimu3g01995 377 Pfam EamA-like transporter family 7 143 IPR000620 GO:0016020
Vimu3g01995 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 218 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01995 Vimu-Chr3 34847000 34848787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01995 6 321 Nodulin-like Gene Family AT1G09380 56.386 1.13e-129 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01995 - - var:108325504 686.797