Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01991 ATGCCAGCAAGGAAATATTACTGCGATTACTGTGACAAGCAATTCCAAGACACACCAGCTGATCGGAAACGACACGTTAATGGTATTCAACACCTCCAAGCCAAAGCTCGCTGGTACGATTCCTTCAATCAACACCACCAACAAATCCCTAATCCTCCCCTTTGCTTTCACTTCCTCAACACGGGTTTTTGCCGTTACGGCCACTCTTGCAAGTACCTTCATCCCACTCCCAACAATACTACACAGCACGCTCCAATCCCCTCACCAGGGAATGTGGTAGGAGTGTCATTGGGAAATTTGCCCCCGTCGTTGCAGCCTCCGCCGGAGGCTGGATATCCCCATCTCCCCTTTGTGGATTGGGGATAG 366 0.5055 MPARKYYCDYCDKQFQDTPADRKRHVNGIQHLQAKARWYDSFNQHHQQIPNPPLCFHFLNTGFCRYGHSCKYLHPTPNNTTQHAPIPSPGNVVGVSLGNLPPSLQPPPEAGYPHLPFVDWG 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01991 121 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Vimu3g01991 121 Pfam U1 zinc finger 5 39 IPR013085 GO:0008270
Vimu3g01991 121 SUPERFAMILY CCCH zinc finger 49 77 IPR036855 GO:0046872
Vimu3g01991 121 Gene3D Classic Zinc Finger 3 45 - -
Vimu3g01991 121 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
Vimu3g01991 121 SUPERFAMILY beta-beta-alpha zinc fingers 4 49 IPR036236 -
Vimu3g01991 121 PANTHER NUCLEASE-RELATED 1 121 - -
Vimu3g01991 121 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 75 IPR000571 GO:0046872
Vimu3g01991 121 Gene3D - 46 91 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu3g01991 zf-U1 8.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01991 K13152 - gmx:100527203 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01991 3 34820732 34821323 Vimu3g01991 3 34820732 34821323 ECH