Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01990 GAAGTTAACGGAGAAAGGGATTCAGTGAAGATGACATCCGTTGGTGTGGCACCAACTTCGGGCTTGAGAGAAGCCAGTGGGCATGGAGCAGCAGGTGTTGATAGGTTGCCGGAGGAGATGAACGATATGAAAATTAGGGATGATAGAGAAATGGAAGCCACTGTTGTTGATGGCAATGGAACGGAGACCGGACATATCATTGTGACTACCATTGGGGGTAGAAACGGTCAGCCGAAGCAGACTATAAGCTACATGGCAGAACGTGTTGTAGGTCATGGATCATTTGGTGTTGTCTTCCAGGCTAAGTGCTTGGAAACTGGTGAAACCGTGGCTATCAAAAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACCACCCAAATGTTGTCTCTTTGAAGCACTGTTTCTTTTCAACAACTGAAAAGGATGAACTCTACCTTAATTTGGTACTTGAGTATGTTCCTGAAACAGTTAATCGTGTGATCAAACATTACAACAAGTTGAACCAAAGGATGCCTCTGATATATGTGAAACTCTATACATACCAGATCTTTAGGGCATTATCTTATATTCATCGTTGCATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGGTCAATCCACACACACACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATATTACAGAGCACCTGAGCTTATATTTGGAGCAACTGAGTACACTACAGCCATTGACATCTGGTCTGTTGGATGTGTCCTAGCTGAGCTGCTGCTTGGACAGCCTTTGTTCCCTGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATTATAAAGGTTCTCGGCACTCCAACAAGGGAAGAGATTAAATGCATGAACCCTAACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGATCTTCCACAAGCGCATGCCTCCAGAGGCTGTTGATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTTTAGATGCTCTGACGCATCCTTTCTTTGACGAGCTTCGTGATCCAAACACTCGCTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTTAAATCTCACGAACTGAAAGGAGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAACATGCGAGGAAGCAATGCCCGTTTCTTGGCTTGTGA 1263 0.4386 EVNGERDSVKMTSVGVAPTSGLREASGHGAAGVDRLPEEMNDMKIRDDREMEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVNRVIKHYNKLNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALDALTHPFFDELRDPNTRLPNGRFLPPLFNFKSHELKGVPAEILVKLVPEHARKQCPFLGL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01990 420 FunFam Glycogen synthase kinase-3 beta 68 163 - -
Vimu3g01990 420 FunFam Shaggy-related protein kinase kappa 164 412 - -
Vimu3g01990 420 SMART serkin_6 84 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01990 420 Pfam Protein kinase domain 84 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01990 420 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 48 414 - -
Vimu3g01990 420 SUPERFAMILY Protein kinase-like (PK-like) 83 394 IPR011009 -
Vimu3g01990 420 MobiDBLite consensus disorder prediction 1 34 - -
Vimu3g01990 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vimu3g01990 420 Gene3D Phosphorylase Kinase; domain 1 68 163 - -
Vimu3g01990 420 Gene3D Transferase(Phosphotransferase) domain 1 164 412 - -
Vimu3g01990 420 CDD STKc_GSK3 79 371 IPR039192 -
Vimu3g01990 420 ProSitePatterns Protein kinases ATP-binding region signature. 90 114 IPR017441 GO:0005524
Vimu3g01990 420 ProSiteProfiles Protein kinase domain profile. 84 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01990 Vimu-Chr3 34816091 34819241 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01990 90 396 MAP Kinase Gene Family AT2G43790 34.796 6.79e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vimu3g01990 Pkinase 5.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01990 K27413 - gmx:100798867 840.491