Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01987 ATGGGTGCTGATCTTAAAGAAGAATTGTCCGTGAAAACTCCTGTTTTTGATCTTAAGGTTTGGGAACTGATTGGAATTGCGGTTGGACTGTTTATCATTGTCATCCTCTGTGTGCTCTCATTCTGCCTTACTTCAAGGAAGAAGTCTAGAAAAGCCAGGGATAGGGTTCCTGTTAGTCATATACCTGCTGTCTCAAAGGAAATCACAGAAGTGCGAGTTGAGCAAGTGCCGGCGAATGGATTTGTTCCACGTGAAGGAATACTTCTGACAATTCATGATAAATCCAGTGACAAAGAATCAGATAAAGTTATGCTCCATTTAGGTGTTGGGAAGAAGAAGCATGGAGATAGTGGTAGTCACTCGGATTCGTTTCATTACTTGGAGAAAGATGGTGGAGGGTCACAATCAGGGGAGGAGATTAGCTCTGGCTCGGTTGGAATGTACATGCCATCTTCTTCATACCCTATAACAGCTCCTTCACCTCTCTCTGGTCTTCCAGAATTCTCTCACTTGGGTTGGGGTCACTGGTTTACTCTGAGGGATCTCGAGCTTGCTACAAACCGTTTTTCAAAAGAAAATGTAATTGGTGAGGGTGGGTATGGAGTTGTTTACCGGGGACAGTTGATCAATGGGACTCCAGTGGCAGTTAAAAAGATACTCAATAACATTGGTCAAGCTGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGTCATGTCCGACATAAAAATTTGGTTCGACTTTTGGGGTACTGCATGGAGGGGACTCACAGGATGTTAGTCTATGAATACGTCAGTAATGGAAACTTAGAGCAATGGCTTCACGGAGCTATGCGACATCATGGATATCTTACCTGGGAAGCACGTATAAAGATTCTCCTTGGCACAGCTAAGGGGCTTGCATATTTGCATGAAGCGATTGAGCCAAAGGTGGTGCACCGAGATATCAAGTCAAGCAACATATTAATTGATGATGACTTTAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGTTACTGGGTTCTGGGAAGAGTCATGTTGCAACACGAGTTATGGGAACCTTTGGATATGTGGCCCCTGAATATGCAAATACTGGTCTTCTAAATGAAAAAAGTGATGTGTATAGCTTTGGTGTTGTGCTATTGGAAGCAATTACTGGAAGAGATCCAATTGACTATGGTCGCCCAGCACAGGAATTTGTTATGACAAATTCTGATGAAGGAATTTTGAGTGACATTTACGATGAACTACAATGCCCTCAGGTTAACATGGTTGATTGGCTGAAGATGATGGTTGGAAACAGACGATCAGAAGAAGTGGTGGACCCAAACATTGAGGTGAAGCCATCTACCAGGGCTTTGAAACGGGCGCTCTTAACTGCTTTGAGATGTGTAGATCCAGATTCAGAGAAAAGACCCAAGATGGGTCAAGTTGTGCGTATGCTTGAGTCAGAGGAGTACCCTTTAGCTAGAGAGGACCGTAGGCATCGAAGAAATCATGGAGTTAACTCAGAAATTGAATCCCATAAGGATAGTTCTGACACGGATGGGAGTGACATTCAAGGTTCTAGATCAGAAAGTGGAAGATTCTTGGATTTGCCTACCAGAGATGGCTATGGCAGAGGCTGA 1629 0.4352 MGADLKEELSVKTPVFDLKVWELIGIAVGLFIIVILCVLSFCLTSRKKSRKARDRVPVSHIPAVSKEITEVRVEQVPANGFVPREGILLTIHDKSSDKESDKVMLHLGVGKKKHGDSGSHSDSFHYLEKDGGGSQSGEEISSGSVGMYMPSSSYPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKENVIGEGGYGVVYRGQLINGTPVAVKKILNNIGQAEKEFRVEVEAIGHVRHKNLVRLLGYCMEGTHRMLVYEYVSNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKGLAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGSGKSHVATRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLLEAITGRDPIDYGRPAQEFVMTNSDEGILSDIYDELQCPQVNMVDWLKMMVGNRRSEEVVDPNIEVKPSTRALKRALLTALRCVDPDSEKRPKMGQVVRMLESEEYPLAREDRRHRRNHGVNSEIESHKDSSDTDGSDIQGSRSESGRFLDLPTRDGYGRG 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01987 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Vimu3g01987 542 MobiDBLite consensus disorder prediction 112 127 - -
Vimu3g01987 542 ProSiteProfiles Protein kinase domain profile. 189 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01987 542 MobiDBLite consensus disorder prediction 490 517 - -
Vimu3g01987 542 CDD STKc_IRAK 195 483 - -
Vimu3g01987 542 Gene3D Transferase(Phosphotransferase) domain 1 265 499 - -
Vimu3g01987 542 Gene3D Phosphorylase Kinase; domain 1 171 264 - -
Vimu3g01987 542 FunFam Putative receptor-like protein kinase 171 264 - -
Vimu3g01987 542 SUPERFAMILY Protein kinase-like (PK-like) 173 491 IPR011009 -
Vimu3g01987 542 SMART serkin_6 189 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01987 542 Pfam Protein kinase domain 190 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01987 542 PANTHER OS01G0323000 PROTEIN 5 508 - -
Vimu3g01987 542 MobiDBLite consensus disorder prediction 490 542 - -
Vimu3g01987 542 ProSitePatterns Protein kinases ATP-binding region signature. 195 218 IPR017441 GO:0005524
Vimu3g01987 542 MobiDBLite consensus disorder prediction 112 144 - -
Vimu3g01987 542 FunFam Putative receptor-like serine/threonine-protein kinase 265 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01987 Vimu-Chr3 34789446 34793433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01987 132 485 Trihelix Transcription Factor Family AT1G70460 44.722 2.74e-87 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vimu3g01987 Pkinase 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01987 - - gmx:100778269 911.753