Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01982 ATGGGCGAAGGCGGAGCGGCCACGGCGGTTGCGGAGGCACAGTACTCGTTGGTCAAAACTTCCGTTTGGTGGGATATAGAGAACTGTCAAGTGCCCAAAGGGTGCGATCCCCACGCCATAGCGCAGAATATAAGTTCCGCTCTCGTTCGGATGAATTATTGCGGGCCCGTTTCCATCTCTGCTTACGGGGACACCACTGGCATCACTGCCTCCGTTCAGCATGCCCTCTCCAGCACCGGCATCTCCCTCAACCATGTCCCCGCCGGTAATCCATTTTCCCTCTCTATCCAACCCCCAAACTTTAGTTGCTTGCCTATATCTTTTACTTTTTTTCCCTGA 339 0.5398 MGEGGAATAVAEAQYSLVKTSVWWDIENCQVPKGCDPHAIAQNISSALVRMNYCGPVSISAYGDTTGITASVQHALSSTGISLNHVPAGNPFSLSIQPPNFSCLPISFTFFP 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01982 112 Pfam NYN domain 19 88 IPR021139 GO:0004540
Vimu3g01982 112 PANTHER LIMKAIN B LKAP 15 86 IPR024768 GO:0005777|GO:0010468
Vimu3g01982 112 CDD PIN_limkain_b1_N_like 19 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01982 Vimu-Chr3 34748884 34749222 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01982 9 89 C2H2 Transcription Factor Family AT5G61190 67.901 1.02e-34 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01982 - - vun:114190683 167.548