Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01981 ATGTTATTCTGGGCTGTGGACAATCCTGCACCTGCTAATTACTTATTAATATCTGGTGATAGAGACTTTTCCAATGCTCTTCATCAGCTGCGGTTGAGGAGGTATAATATTCTTCTTGCACAGCCTAAGAAAGCTTCTGCACCCCTAGTAGCAGCTGCCAAGAGTGTGTGGCTTTGGACTAGTCTCTTGGCTGGAGGACCTCCCCTTACGAAGGGTGAATCACTACAACTTGCTAACAATGACATCCAATCCTCTTCTGACTCCATACAAAGTACAGTCCATAATTCCTTTCAGATACCGCAGTATCTGGAATCCTATGCAGAAGTTCATACAGGAAATCAGAAATTTCCTGGTACAGGAAGGCAACTTGATTCTAGACATCATGGGAAGACGAATGGGAAAAAATCAAGTAAACCAAATGGACCAAAGGTCATGAATCCAGCTCCAGTTGGACTTCAAGAAAATTATGGTTATATAAATTCTTCTCGACCTGGGAACTATACCCATAGTGTTCCCCCAAGTGGTTCTACAACAAATTTTACCCATAATGTTCCCCCAAGTGAATCTACACCAAATTTTACCCATAATGTTCCCCCAAGTGGTTCTACTCCTAATTTTACTTGTGGCAATCCTGATCAAATGCGGGGCAATAATGGTACTCCACCTGGAAATCATCAAAATCCACATTCACAGGCATTAAGATCAAATTCTTTTCCTTTGCAGCCTCCTTTTGCACCAAGCAGTTCATTTTCCCCAAATTCCCAAACTTTTGCAACTTCAGTAGTGCCAACTAGAACCGGTGGGCCCAGCTTCTCTGCACCACCACTTACGAAGGTGCCAGATGTTGGTAATATTTATCCTAGTAACGCTCACGATCCACACTTGAAACGGAGTTCTTACAGTATTTCTTCAAATCCTATTAAGTCCATTGATGAACCACATGGGCACATGATACAGAATGCACAACATTTGTATAATGGCCATTCACATGGTCCAAAACACCAACCTACATCAGCAACTGTGGGTAATAATGATCTTCCTGGAAATGGTATGTGGGGATCTCCAGGATTTCCTAAACCTTCTGAATATGTCCAAGGTCTTATAGGGGTTGTTTTACTTGCCTTGAACACACTAAAAACTGAAAAAATTATGCCTACTGAGTCAAATATAACGGATTGTATTCGATGTGGAGACCCCAAGCATCGCAGTACAGATGTCAAGAAGGCTCTGGAGAGTGCAGTTGAGCAGCAGATGGTAGTGAAGCAGAAAGTAGGTGCTTTGCGGTTGTTTGTTGGTAAGAATGATAAAGTTTGGAAGTGTGTAAACCCTATAGGTGGTAATCCTAAGAAGCACCCAAAAGAGACATGGAATGAAATTAAAAAATTTCTATCTACTTCTTCGGGAAGATTAGCAATAATGAGTACGCAGTGCAAGTAA 1437 0.4161 MLFWAVDNPAPANYLLISGDRDFSNALHQLRLRRYNILLAQPKKASAPLVAAAKSVWLWTSLLAGGPPLTKGESLQLANNDIQSSSDSIQSTVHNSFQIPQYLESYAEVHTGNQKFPGTGRQLDSRHHGKTNGKKSSKPNGPKVMNPAPVGLQENYGYINSSRPGNYTHSVPPSGSTTNFTHNVPPSESTPNFTHNVPPSGSTPNFTCGNPDQMRGNNGTPPGNHQNPHSQALRSNSFPLQPPFAPSSSFSPNSQTFATSVVPTRTGGPSFSAPPLTKVPDVGNIYPSNAHDPHLKRSSYSISSNPIKSIDEPHGHMIQNAQHLYNGHSHGPKHQPTSATVGNNDLPGNGMWGSPGFPKPSEYVQGLIGVVLLALNTLKTEKIMPTESNITDCIRCGDPKHRSTDVKKALESAVEQQMVVKQKVGALRLFVGKNDKVWKCVNPIGGNPKKHPKETWNEIKKFLSTSSGRLAIMSTQCK 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01981 478 Pfam NYN domain 1 54 IPR021139 GO:0004540
Vimu3g01981 478 PANTHER LIMKAIN B LKAP 1 420 IPR024768 GO:0005777|GO:0010468
Vimu3g01981 478 MobiDBLite consensus disorder prediction 112 266 - -
Vimu3g01981 478 MobiDBLite consensus disorder prediction 155 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01981 Vimu-Chr3 34745981 34747417 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01981 1 80 C2H2 Transcription Factor Family AT5G61190 78.750 1.43e-35 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01981 - - var:108318778 854.358