Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01980 ATGGGCGAAGGTGGAGCGGCGACGGCGGTTGCGGAGGCACAGTACTCGTTGGCCAAGACTTCGGTTTGGTGGGACATAGAGAACTGTCAAGTGCCCAAAGGGTGCGATCCCCACGCCATCGCGCAGAATATAAGCTCCGCTCTCGTTCGGATGAATTATTGCGGTCCCGTTTCCATCTCTGCTTACGGCGACACCACTGGCATCACTGCCTCCCTGCCAAGAGTGTCTGGCTTTGGACTAGTCTCTTGGCTGGAGGACCTCCCCTTACGAAGGGTGAATCACTACAACTTGCTAACAATGACATCCAATCCTCTTCTGACTCCGTACATAATGCCTTTCAGATACCCCAGTATCTGGAATCCTCTTCAGAAGTTCATACAGGAAATCAGAAATTTCCTGGTACAGGAAGGCAACTTGATTCTAGACATCATGGGAAGACAAATGGGAGAAAGTCAAATAAATCAAATGGACCAAAGGTCAAGAATCCTCCAGTTGGACTTCAAGAAAATGATGGCAATATAA 522 0.4904 MGEGGAATAVAEAQYSLAKTSVWWDIENCQVPKGCDPHAIAQNISSALVRMNYCGPVSISAYGDTTGITASLPRVSGFGLVSWLEDLPLRRVNHYNLLTMTSNPLLTPYIMPFRYPSIWNPLQKFIQEIRNFLVQEGNLILDIMGRQMGESQINQMDQRSRILQLDFKKMMAI 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01980 173 CDD PIN_limkain_b1_N_like 19 72 - -
Vimu3g01980 173 PANTHER LIMKAIN B LKAP 15 70 IPR024768 GO:0005777|GO:0010468
Vimu3g01980 173 Pfam NYN domain 19 70 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01980 Vimu-Chr3 34731532 34735175 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01980 9 68 C2H2 Transcription Factor Family AT5G61190 71.667 2.48e-25 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01980 - - vun:114190683 134.42