Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01967 ATGGCTAGGAAGAAATTGAAACTTGCTTTTATCTCTGATGAGATGACAAGGAAAAGCACGTACAAGAGAAGGAAGAAGATTTGTGCTATAATCTGTAATCCTTTTGATTCTGAGACAGAAGTTTGGCCAAATCCAGAAGGAGCCAACAAGGTGATCGAAAGGTTTAAGAATGCATCTGTGCTGAACAAAAGCAGGAATGTGAACCACGAAAGCTTCATGCTGCAAAGGATCGTCAAAGCCCAAAACGAATTGAAGATGCAACGTCAAGACAACTACGAGAAGGAGATTACCTTGTCCATGTTTCAGTTCATGCTAGGTCAAAACCTGCCAAATACCGTTCAAGAAATCATAGAAATCCACAAAATCATTGACAAAAATATAAAAGAGATTGAGAATAACTTGGATGCACTCAACTGTCACTCTATTTGA 429 0.3869 MARKKLKLAFISDEMTRKSTYKRRKKICAIICNPFDSETEVWPNPEGANKVIERFKNASVLNKSRNVNHESFMLQRIVKAQNELKMQRQDNYEKEITLSMFQFMLGQNLPNTVQEIIEIHKIIDKNIKEIENNLDALNCHSI 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01967 142 SMART madsneu2 1 44 IPR002100 GO:0003677|GO:0046983
Vimu3g01967 142 SUPERFAMILY SRF-like 1 65 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01967 Vimu-Chr3 34652987 34653463 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01967 1 106 Type I MADS-box Gene Family AT5G48670 38.211 8.08e-21 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01967 - - var:108324686 211.846