Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01965 ATGACAAGGCAGAAAGTGAAACTTGCGTATATCAGTGATGTGACGGCAAGGAAATCGACGTACAAGAAAAGGAAGAAGGGTATCATTAAGAAGGTGAGGGAACTGACGATTCTGTGTGGGATCCCAGCCTGTGCAATAATTTCAAGTCCTTTTGAAGCTAAGCCAGAGATTTGGCCAGATCCTGAGGGAGCAAAGCAAGTGATTCAAAGGTATATGGATGCATCTGTTATTGATGAAAGCAAGAATGTGAACCAAGAGAGTTTCCTCATTCAGAGGATTGCCAAAGCCCAGGAACAGTTGAAGAAATTGCGTCAGGAGAATCAAGAGAAGGAGAAGATCTTGTCCTTGTTCAGCTACATGCAAGGTGAAGACCTCCCGACTGATGTTCAAGAACTCAAACAACTCAAAAAGCTCGTTGAGAACACTCTGAAGGAAACTAAAATCAAGATGGACGACCTCAATTGTGAGTCTATGTAG 477 0.4298 MTRQKVKLAYISDVTARKSTYKKRKKGIIKKVRELTILCGIPACAIISSPFEAKPEIWPDPEGAKQVIQRYMDASVIDESKNVNQESFLIQRIAKAQEQLKKLRQENQEKEKILSLFSYMQGEDLPTDVQELKQLKKLVENTLKETKIKMDDLNCESM 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01965 158 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu3g01965 158 Coils Coil 86 113 - -
Vimu3g01965 158 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Vimu3g01965 158 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu3g01965 158 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu3g01965 158 PANTHER MADS BOX PROTEIN 3 150 - -
Vimu3g01965 158 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Vimu3g01965 158 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vimu3g01965 158 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Vimu3g01965 158 Coils Coil 129 156 - -
Vimu3g01965 158 FunFam Agamous-like MADS-box protein AGL92 13 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01965 Vimu-Chr3 34633989 34634465 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01965 1 153 MADS-box Gene Family AT5G26630 47.436 1.88e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu3g01965 SRF-TF 5.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01965 - - var:108325536 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01965 3 34633989 34634465 Vimu3g01965 3 34633989 34634465 ECH