Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01960 ATGGTTTTGAAAAACCATCCCAAAAAACCAAAGGAGGAAAAGAAGGTCAGTTTTTTCTGCATAGGGTACCTGGCTGGCAGAATAAAAGTTAGTCAAGAAAAGGAAAGAGCCATAGAACCGTCCAAACATGATGACCCAGATGGTGGGGCCAAAGATTGTCCCGTGAAGAAGGGTGGGGTGAGGTCCCAGTTGAGGAAACCATTCATTCTTCCTCCACGTACGTTTTCACAAAAAACCATTGAAGGATTCAACACTTGCTCACTCACGTACACATGGGAAGACACTCTTGTTGCTACAAACAGAAGTTACGGAAAGGCCTTTGGTCTCCAGAGGAAGATGAGAAGCTTCTGGATTACATCACCAAACATGGTCATGGATGTTGGAGTTCAGTCCCCAAACTTGCTGAGGTGTGGGAAGAGTTGTAGGTTGAGGTGGATAAATTACCTGAGGCCTGATTTGAAGAGAGGAGCATTCTCACAGGAGGAGGAGAACATGATCATTGAACTCCATGCAGTCCTTGGAAACAGGTGGTCTCAGATTGCAGCACAGTTACCGGGAAGAACTGACAATGAGATTAAAAACTTATGGAACTCGTGCCTGAAGAAGAAGCTGAGGCAAAGAAGCATTGACCCAAACACCCACAAACCACTCTCTGAGGTTGAGAAGGACAAGGACATGCCACCCTCAACCGACAAAACCAATCAGAAAGCCTCATTGGGATCCAATGAAGTGAGTTTGGTTGATCAGCCAGCAAAAGCCTTGCCTTCTTCAGAGAGATACCCTCTTGAAGTTTCCACCAGTTCAACCCAGGAACTATTCCTAGATAGGTTTGGTGCTACCTGCCATGACAACACTTGCAGACCCTCTGATGTGGTAGGACCATACTTCTCCTTCCACCACTTCAACTATGGAACAACAAACATCGGCCTCTCTGCAAACCCCAACGCATCTCTTTCTTTCGTTCCACCCTCCACCTCTTCAGACCTCAACAATTCCACCATAACCTCCTCTATGCTGCATTCCATTTTCCCAACACACGTCAAGCTCCAATCTAACGACAACCCTTCCATATCCTCTGATGCGGTTCAAAACTGGGAATCCAACAACACAAACAAAAGCAATGCCAGTATACAGTTTCAAAGCAGCACAAACTTCCTTGAAAACACGTGGGGGGTGGCTGAGTCTGCAAAGGTTAACATTAACAAAGATTCTCAAGTGCCCCTTCAGACAGAACAAGAGGATCTAAAATGGTCTGAGTATCTTAACACCCCTTTTATTCTGGGAAACACACCGGAGAATCAAATCCAAACCTCTCAATCTATCTACAGTGAGGTCAAACCAGAAACAGGATTCATAACAGACGAGTCATGTACTAGTTGGCACCATCCGCCACCAGCTTTTCAACTTTCCGATATATATAGCAAGAATCTGCAGAGATTTTCAGTGACTTTTGGACAAACCCTTTAA 1467 0.4513 MVLKNHPKKPKEEKKVSFFCIGYLAGRIKVSQEKERAIEPSKHDDPDGGAKDCPVKKGGVRSQLRKPFILPPRTFSQKTIEGFNTCSLTYTWEDTLVATNRSYGKAFGLQRKMRSFWITSPNMVMDVGVQSPNLLRCGKSCRLRWINYLRPDLKRGAFSQEEENMIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRSIDPNTHKPLSEVEKDKDMPPSTDKTNQKASLGSNEVSLVDQPAKALPSSERYPLEVSTSSTQELFLDRFGATCHDNTCRPSDVVGPYFSFHHFNYGTTNIGLSANPNASLSFVPPSTSSDLNNSTITSSMLHSIFPTHVKLQSNDNPSISSDAVQNWESNNTNKSNASIQFQSSTNFLENTWGVAESAKVNINKDSQVPLQTEQEDLKWSEYLNTPFILGNTPENQIQTSQSIYSEVKPETGFITDESCTSWHHPPPAFQLSDIYSKNLQRFSVTFGQTL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01960 488 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 150 204 IPR017930 -
Vimu3g01960 488 SUPERFAMILY Homeodomain-like 136 210 IPR009057 -
Vimu3g01960 488 Gene3D - 156 231 - -
Vimu3g01960 488 MobiDBLite consensus disorder prediction 207 261 - -
Vimu3g01960 488 CDD SANT 157 197 IPR001005 -
Vimu3g01960 488 MobiDBLite consensus disorder prediction 34 60 - -
Vimu3g01960 488 FunFam MYB transcription factor 156 228 - -
Vimu3g01960 488 ProSiteProfiles Myb-like domain profile. 150 200 IPR001005 -
Vimu3g01960 488 SMART sant 154 202 IPR001005 -
Vimu3g01960 488 PANTHER MYB DOMAIN PROTEIN 55 133 399 - -
Vimu3g01960 488 MobiDBLite consensus disorder prediction 207 230 - -
Vimu3g01960 488 Pfam Myb-like DNA-binding domain 155 199 IPR001005 -
Vimu3g01960 488 MobiDBLite consensus disorder prediction 231 245 - -
Vimu3g01960 488 Gene3D - 106 154 - -
Vimu3g01960 488 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01960 Vimu-Chr3 34538490 34541083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01960 134 488 MYB Transcription Factor Family AT1G09540 44.595 5.75e-72 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu3g01960 Myb_DNA-binding 4.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01960 K09422 - gmx:778072 551.206