Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01959 ATGGAAAAGAACGCCACAATGGTCTCTGCTGTTTCTCTCATTCTCGTAGTAGGCGTTGCCCTAGGCGTTGTCGCTTTTGTATCCACGGGCAACGACGACGAACCCGCCACCACAGGCGACACCACCGGAAAGTTGACCACCCACACCAAAGCTGTGCAAGCCGTGTGCGCAAACACTGACGATAAGAAGTTCTGCTCTGACACTTTCAGCTCCGTCAACACCTCAGACCCAACCGCATACGTAAAAACCGTGGTCACAAAAGCCATGGACGACGTCATCAAAGGCTTCAACCTAAGCGACACTCTCAAGATCGAAAACAGCAAGGGAAACTCAACAGTCAAGATGGCCCTCGATGATTGCAAGGACCTGTTGGAATTCGCCATCGAAGAATTACAAGCTTCCGAGATTATAGTGAAAGAGAACAACATTAACAACATCAACGACCGCGCTGCAGACCTCAAAAACTGGATTGGCGCCGTCGTTGCATACAAGGAATCGTGCCTGGACGGCTTCAACACGGACGGGGAGAAGGAGGTGCAATCCAAGTTGAAAACTGAAAGTTTGGACAGAATTGGGAAGTTAACGGGGTTAGCTCTTGACGTTGTGTCCGGCTTCAGTGAAGTACTCTCGGACTTCAATTTGGATCTGACTGCCAAGACTTCGTCTCGTCGTCTTCTCGATGTGGACCAAGAGGGATATCCATCGTGGTTGTCCGTGCCGGATCGGAAGCTCTTGGCGGACACAGCTTCCGTTAAACCTAACGCGGTTGTTGCCAAGGATGGTAGTGGCGATTATAAGACCGTTGAGGAGGCTATTAACTCCTACCCGAAAAATCATCAAGGCAGATTCATTATCTACGTCAAGGCTGGTACCTATGATGAATACATCAAAGTTGACAAAAAGAAGAGTAGAATTCTGCTATATGGCGATGGCCCCACAAAGACAATTATCACCGGCAATAAAAACGTCGTTGATGGTTATAAGACAATTAGAACCGCCACCTTCTCCACGGTTGCAGAAGATTTCATGGCAAAGTCTATTGCATTTGTGAACTCTGCCGGCGCGGCTAAACACCAAGCAGTCGCATTGCGCGTTCAAGGCGATAGGTCGGCCTTCTTCGACTGCGCCATGCACGGTTACCAGGACACGTTGTACACCCACGCTCATCGTCAGTTCTACCGCAACTGCGAAATCTCTGGCACGGTGGATTTCATTTTCGGGTACGGCACCACCCTGATCCAGAACTCGAAGATCATTGTGCGGAAACCAGATCCGAATCAGCAGAACATTATTGTGGCGGACGGGACGGACCAAAAGAACATGCCGACAGGAGCGGTGCTGCAAAACTGCGATATCATGGCGGAGCCGGAACTGGAAAAGGTAAAGACGTCCTTTAAGACGTACTTGGCTCGGCCGTGGAAGGCATATTCGAGGGCAATCTTCCTAGAAAACACGATCACTGATGTGATTCAGCCAGATGGGTATCTTCCCTGGAATGGGAACCTGAACCTGGACACGTGTTTCTTTGCTGAGTATGAGAACACTGGGGCTGGTGCCGATCTGAAAGCTAGGGTGAAGTGGAGTCGCGGGGTCCTTAGCAAGGCTGATGCTAACAAATACACTGCTGACCAATGGCTCCAGGCCAACGCCTGGCTCCCTGCCACTGGCATTCCTTTCACTCCTGGCCTCACCAAACCTTGA 1701 0.505 MEKNATMVSAVSLILVVGVALGVVAFVSTGNDDEPATTGDTTGKLTTHTKAVQAVCANTDDKKFCSDTFSSVNTSDPTAYVKTVVTKAMDDVIKGFNLSDTLKIENSKGNSTVKMALDDCKDLLEFAIEELQASEIIVKENNINNINDRAADLKNWIGAVVAYKESCLDGFNTDGEKEVQSKLKTESLDRIGKLTGLALDVVSGFSEVLSDFNLDLTAKTSSRRLLDVDQEGYPSWLSVPDRKLLADTASVKPNAVVAKDGSGDYKTVEEAINSYPKNHQGRFIIYVKAGTYDEYIKVDKKKSRILLYGDGPTKTIITGNKNVVDGYKTIRTATFSTVAEDFMAKSIAFVNSAGAAKHQAVALRVQGDRSAFFDCAMHGYQDTLYTHAHRQFYRNCEISGTVDFIFGYGTTLIQNSKIIVRKPDPNQQNIIVADGTDQKNMPTGAVLQNCDIMAEPELEKVKTSFKTYLARPWKAYSRAIFLENTITDVIQPDGYLPWNGNLNLDTCFFAEYENTGAGADLKARVKWSRGVLSKADANKYTADQWLQANAWLPATGIPFTPGLTKP 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01959 566 FunFam Pectinesterase 248 563 - -
Vimu3g01959 566 SMART PMEI_2 47 201 IPR006501 GO:0004857
Vimu3g01959 566 Pfam Plant invertase/pectin methylesterase inhibitor 51 199 IPR006501 GO:0004857
Vimu3g01959 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 201 IPR035513 -
Vimu3g01959 566 Pfam Pectinesterase 254 548 IPR000070 GO:0030599|GO:0042545
Vimu3g01959 566 PANTHER PECTINESTERASE 19 553 - -
Vimu3g01959 566 CDD PMEI-like_3 54 206 - -
Vimu3g01959 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 205 IPR035513 -
Vimu3g01959 566 Gene3D - 248 563 IPR012334 -
Vimu3g01959 566 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Vimu3g01959 566 SUPERFAMILY Pectin lyase-like 251 562 IPR011050 -
Vimu3g01959 566 NCBIfam pectinesterase inhibitor domain 45 187 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01959 Vimu-Chr3 34526027 34527827 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01959 2 563 Carbohydrate Esterase AT3G05610 41.681 3.43e-149 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01959 K01051 - gmx:100820142 862.833