Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01957 ATGGGAAACCTTTTCTGGCCTGGCATTGTTGCAGCACTTGTTTTTGGCTTCTGGGTTGATGCCTTTTCAGCCTATCAATATCACCACTTCAATGGAACCGAGTTCTCTTTGTTGGAGGCTCAAGAACAAGCATTTTCGTCCCTCACTGGGAGGTCTCCTCTTATGGTAGGACTCACACTCATTCCAAGTGCTGCTGCCAAAGGAGCAGTTTGCTTGGATGGAACATTGCCTGGTTATCATTTACATCGAGGATATGGATCAGGAGCTAACAGCTGGGTTGTTAATTTAGAGGGAGGTGGGTGGTGTAATGACGTTAGATCATGTGTTTATCGCAAGAAAACACGGCGTGGGTCATCAAGATTCATGGAGAAAGAGATACCATTTACAGGAATATTAAGCAATAGTGCTGAAGATAATCCAGATTTTTTCAACTGGAACAGAGTGAAAATTCGTTATTGTGATGGTGCATCGTTTGCCGGGGATAGTGAACATAAGGCTGCTCAACTGCAATTTAGAGGACAACGTATATGGTTGGCTGCAGTGGAAGATTTGATGTCAAAGGGAATGAGATTTGCCAAGCAGGCTCTGCTTTCTGGATGCTCCGCTGGTGGTCTGGCTACTATTATACATTGTGATGAATTTCGAGGGTTTTTTCCACACACTACCAAAGTGAAGTGTCTCAGTGATGCAGGGTTATTTCTTGATGCGTATGTGGCTAACTGCACTATTTTATTGCATGAATGTGTTTCCATTGTTACCACAGGATTTTCGGTCCTTCAATTTTTGGATAATTCCTCCCTTGATGGGACATACCATCAGGAATCTTTTCAGTGGTGTCGTAGGACTGCAGGTTTGAAATTTGGCCATTTTTACATTGTTATAACTCTTTACTACTTGATGGGAGTGCAGAAGAATCTGCCTCGCACTTGTACTAATCACCTCGATCCCACTTCGAACTTGATTGCAAGTATTAGAACCCCGCTGTTCATTCTTAATACGGCTTATGACTCATGGCAGATACAATCAAGCTTAGCTCCTTCATCGGCTGATCCCCGTGGCTATTGGCATGATTGTAGATTAAATCATGCTAAATGTACTGCTTCACAAATCCAATATTTGCAAGGTGGATTCAGGAATCAAATGCTGAATGGTATTAAAAGCTTCTCAAGATCATATCAGAATGGATTATTCATAAACTCTTGTTTTGCTCACTGCCAATCTGAGAGGCAGGATACATGGTTTGCAGACAATTCTCCTGTCATTGGGAACAAGGCAATTGCTCTGGCTGTTGGAGACTGGTATTTCGACCGAGCAGTTGTTAAGGCCATTGATTGTCCTTACCCTTGTGATAATACGTGCCACCATCTTGTCTTCAGATGA 1380 0.4268 MGNLFWPGIVAALVFGFWVDAFSAYQYHHFNGTEFSLLEAQEQAFSSLTGRSPLMVGLTLIPSAAAKGAVCLDGTLPGYHLHRGYGSGANSWVVNLEGGGWCNDVRSCVYRKKTRRGSSRFMEKEIPFTGILSNSAEDNPDFFNWNRVKIRYCDGASFAGDSEHKAAQLQFRGQRIWLAAVEDLMSKGMRFAKQALLSGCSAGGLATIIHCDEFRGFFPHTTKVKCLSDAGLFLDAYVANCTILLHECVSIVTTGFSVLQFLDNSSLDGTYHQESFQWCRRTAGLKFGHFYIVITLYYLMGVQKNLPRTCTNHLDPTSNLIASIRTPLFILNTAYDSWQIQSSLAPSSADPRGYWHDCRLNHAKCTASQIQYLQGGFRNQMLNGIKSFSRSYQNGLFINSCFAHCQSERQDTWFADNSPVIGNKAIALAVGDWYFDRAVVKAIDCPYPCDNTCHHLVFR 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01957 459 PANTHER NOTUM-RELATED 54 455 IPR004963 GO:0016787
Vimu3g01957 459 Pfam Pectinacetylesterase 53 248 IPR004963 GO:0016787
Vimu3g01957 459 Pfam Pectinacetylesterase 295 438 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01957 Vimu-Chr3 34510944 34515255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01957 1 459 Carbohydrate Esterase AT1G57590 59.227 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01957 K19882 - gmx:100810716 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01961 6 17607175 17611020 Vimu3g01957 3 34510944 34515255 PCT