Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01955 ATGGGTATTAAGGGTTTAACTAAGCTTTTGTCCGATAATGCTCCAAAGTCCATGAAGGAGAACAAATTCGAGAGCTACTTCGGTCGCAAGATCGCTGTTGACGCCAGCATGAGCATTTACCAGTTCCTTATTGTCGTTGGAAGAAGCGGGACGGAAATGCTCACTAATGAAGCCGGTGAAGTTACCAGTCATTTGCAAGGGATGTTTTCGCGGACAATAAGACTTCTAGAAGCTGGGATGAAGCCAGTATATGTTTTTGATGGGAAGCCACCAGATTTGAAGAAACAAGAGCTGGCAAAACGTTATTCAAAGAGGGCAGATGCTACTGAGGATTTATCAGAAGCCTTAGAGAGTGCCAATAAAGAAGACATTGAGAAATTCAGTAAACGGACAGTGAAGGTGACAAAGCAGCATAATGATGACTGCAAAAGACTTTTAAGACTTATGGGCGTTCCCGTTGTTGAGGCACCCTCAGAAGCAGAGGCTCAATGTGCTGCACTTTGCAAAGCTGGAAAGGCAAGCTCATACCTGTTGCTTATCACTTATGTTCTTGCTTTCGTTTATGCTGTGGCTTCTGAAGACATGGATTCCTTGACATTTGGTGCTCCTAAATTTCTTCGCCACTTAATGGATCCAAGCTCAAAAAAAATTCCAGTGATGGAATTTGAAATTGCAAAGATTTTAGAGGGGCTAAATCTGACCATGGACCAATTTATTGACGTATGCATTCTTTCTGGCTGTGATTATTGTGACAGTATTCGAGGAATTGGGGGACAGACAGCTTTGAAACTCATACGTGAACATGGCTCGATTGAAAATATGCTGGAAAATATAAACAAAGAGAGGTACCAAATACCAGATAATTGGCCATATAAGGAGGCCCGACAGCTTTTTAAAGAACCAATGGTCTTAACTGATGAAAAGGAACTTGATATTAAGTGGACTGCTCCAGATGAAGAAGGGTTAATGACATTTCTGGTAAATGAGAATGGCTTCAATAGTGATAGAGTGACTAAGGCAATAGAAAAGATTAAAGCAGCAAAGAACAAATCATCACAAGGCCGATTGGAATCATTTTTTAAACCCACAGCAAATCCATCAGTACCAATTAAACGCAAGGTATGTATTCATTATGTCTATCATCTACCAAGATGTGGCCATCCGTTGGCTACTTGGCAAAACCTGAGTAATGGGTTGGAAACACCATCGAATAATGCTAAAGAAACTAACAAAAAGGCCAAGGGTGCTGGTGTTAGCCTGAAGGAGGATCAATGCGGTACTTCATTTTACAGAGATACTCTCAATCCTCCATTCATAGAT 1320 0.4106 MGIKGLTKLLSDNAPKSMKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGMKPVYVFDGKPPDLKKQELAKRYSKRADATEDLSEALESANKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKASSYLLLITYVLAFVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFEIAKILEGLNLTMDQFIDVCILSGCDYCDSIRGIGGQTALKLIREHGSIENMLENINKERYQIPDNWPYKEARQLFKEPMVLTDEKELDIKWTAPDEEGLMTFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKVCIHYVYHLPRCGHPLATWQNLSNGLETPSNNAKETNKKAKGAGVSLKEDQCGTSFYRDTLNPPFID 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01955 440 SMART 53exo3 29 320 IPR002421 GO:0003677
Vimu3g01955 440 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 402 IPR006084 -
Vimu3g01955 440 Gene3D - 10 235 - -
Vimu3g01955 440 FunFam Flap endonuclease 1 233 300 - -
Vimu3g01955 440 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518
Vimu3g01955 440 SMART xpgn3 1 108 IPR006085 GO:0004518
Vimu3g01955 440 SMART xpgineu 147 233 IPR006086 GO:0004518
Vimu3g01955 440 SMART HhH_4 235 268 IPR008918 GO:0003677|GO:0003824
Vimu3g01955 440 CDD PIN_FEN1 4 346 - -
Vimu3g01955 440 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Vimu3g01955 440 Gene3D - 236 300 - -
Vimu3g01955 440 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 238 253 IPR006084 -
Vimu3g01955 440 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Vimu3g01955 440 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Vimu3g01955 440 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Vimu3g01955 440 CDD H3TH_FEN1-Euk 236 304 - -
Vimu3g01955 440 Hamap Flap endonuclease 1 [fen]. 1 361 IPR023426 GO:0016788
Vimu3g01955 440 SUPERFAMILY PIN domain-like 2 248 IPR029060 -
Vimu3g01955 440 FunFam Flap endonuclease 1 10 236 - -
Vimu3g01955 440 Pfam XPG I-region 150 248 IPR006086 GO:0004518
Vimu3g01955 440 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 233 368 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01955 Vimu-Chr3 34476223 34481094 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01955 1 373 Core DNA Replication Machinery Family AT5G26680 84.182 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01955 K04799 - gmx:100792878 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01955 3 34476223 34481094 Vimu3g01955 3 34476223 34481094 ECH