Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01952 ATGGCGGTCCCTGGTCACAGTTGTGGTGAGTTCGAAGAGGGAGTTGGGTTCCAGGGAGAAGAAGGGGAGACATGGGTGTTGTTGCCCACACCTCTTTTCTTTATTTTAACCCTTAACTTCCCTTATATCTTCATTGCTTCCTTCCTTTTCTTCTTCTCACTCTTTCCCTTTCGAGTGCAGTTTGGAGTGAAAATGTCTTCCTCGAGGCCCAGCCAATCGTCCAGCAATTCAGGGAGATCAAGACATAGTGCTAGGGTTCTTGCCCAGACAACTGTAGATGCAAAGCTTCATGCAACTTTTGAGGAGTCTGGTAGTTCCTTTGATTACTCCAGTTCGGTGCGAGTCTCTGGTACAGCTGATGGAGTCAATCAACCAAGGTCTGATAAAGTTACGACAGCTTACCTCCATCACATACAGAGAGGAAAGATGATTCAGCCTTTTGGATGCTTGTTGGCTTTAGATGAGAAAACATGTAAGGTCATTGCATACAGTGAGAACGCTCCTGAAATGCTGACCATGGTTAGTCATGCTGTCCCCAGTGTTGGTGACCACCCTGCCCTTGGCATTGGCACTGACATAAAAACTTTGTTCACAGCACCTAGTGCTTCTGCATTGCAAAAGGCTCTGGGATTTGGGGAGGTTTCACTTCTTAACCCGATCCTTGTTCATTGCAAGACCTCTGGGAAGCCCTTTTATGCGATTATTCATCGTGTTACTGGCAGCTTGATCATTGACTTTGAGCCAGTCAAGCCTTATGAAGTTCCCATGACTGCAGCTGGTGCCTTGCAGTCTTACAAGCTTGCTGCCAAAGCAATTACCCGGTTGCAATCTTTGCCTAGTGGAAGCATGGACAGATTATGTGATACAATGGTTCAAGAAGTTTTTGAGCTCACAGGCTATGACAGGGTGATGGCTTATAAATTTCACGATGATGACCATGGGGAGGTGATTGCTGAGATAACAAAGCCAGGCCTTGAGCCATATTTGGGTTTGCATTATCCAGCCACAGATATTCCCCAGGCTTCACGCTTTTTATTTATGAAGAACAAGGTCCGTATGATAGTTGATTGTCATGCAAAACACGTTAAAGTTCTGCAAGATGAAAAACTCCCATTTGATTTGACTTTGTGTGGTTCCACCTTGAGGGCTCCTCATAGTTGTCATGCTCAATACATGGCAAACATGGATTCAATTGCTTCCCTGGTCATGGCAGTTGTAGTCAATGACAACGAAGAAGATGGTGATACTGATGCTGTTCAGCCACAAAAAAGGAAGAGACTTTGGGGTTTGGTAGTTTGCCATAACACTACTCCCAGGTTCGTTCCCTTTCCTCTTAGGTATGCTTGTGAATTTCTGGCTCAAGTATTTGCCATCCATGTGAACAAAGAAATAGAGTTAGAATATCAGATTATTGAGAAGAATATCCTGCGCACACAGACACTGTTGTGTGATATGCTGATGCGAGATGCACCCCTTGGCATTGTATCACAGAGCCCTAATATAATGGATCTAGTGAAATGTGATGGAGCAGCACTCTTATATAAGAACAAGTTATGGAGATTAGGAGTGACACCAAGTGAATCCCAGATAAGAGAGATATCTTTGTGGCTGTCCGAGTACCATATGGATTCCACAGGCTTGAGTACGGATAGCTTGTCTGATGCAGGCTTCCCATCGGCTCTTTCTCTGGGTGATGTTGTGTGTGGAATGGCAGCTGTCAGAATTACTTCAAAAGACGTGGTATTTTGGTTTCGGTCACACACTGCTGCAGAAATCCGATGGGGTGGTGCAAAGCATGAGGCTGGAGAAAAAGATGACGGTAGGAGGATGCATCCGAGATCGTCATTCAAGGCTTTCCTTCAAGTCGTGAAGTCAAGGAGCTTGCCGTGGAAGGACTATGAAATGGATGCCATTCATTCCTTACAGTTAATACTGAGAAATGCATTCAGAGATACTGAGGGTACAGATTTACAGACAAATGCAATTAATACAAAACTAAGTGATCTGAAGATCGAAGGGATGCAGGAACTGGAAGCAGTTACAAGCGAGATGGTTAGGTTGATTGAAACAGCAACAGTGCCTATTTTGGCAGTTGATGTCGATGGGCTGGTAAACGGGTGGAACATAAAAGTTGCTGAGTTGACAGGCCTTCCAGTTGGTGAAGCTATTGGAAAGCATTTACTCGCACTTGTCGAGGATTCTTCAACTGATAGAGTCAAGAAGATGCTTGACTTGGCACTACAAGGTGAAGAAGAGAAGAATGTTCAATTTGAGATCAAAACGTTCGGGTCCAAGATGGACTCTGGTCCTATTAGTCTAGTAGTAAACGCTTGTGCAAGCCGGGATCTTCGAGACAATGTTGTTGGTGTTTGCTTTGTGGCTCATGATATAACTGCTCAGAAGAATGTAATGGACAAATTCACCCGTATTGAAGGTGATTACAAGGCAATTGTACAGAACCCCAATCCATTAATCCCCCCTATATTTGGCACAGATGAATTTGGCTGGTGTTGTGAGTGGAATCCAGCTATGTCAAAGTTAACTGGATGGAAGCGAGAGGAGGTAATGGATAAAATGCTTTTGGGAGAGGTTTTTGGCACCCAGATGTCTTGTTGTCGACTAAAGAATCAAGAAGCTTTTGTTAATTTTGGCATTGTACTTAATAAAGCCATGACTGGCTCAGAAACAGAGAAAGTTGCTTTCGGTTTCTTCGCTCGGAATGGCAAGTATGTAGAGTGCCTACTTTCTGTGAGTAAGAAGTTGGACGTAGAGGGCCTAGTTACTGGGGTTTTCTGCTTCTTACAGCTAGCTAGCCCGGAACTCCAGCAAGCATTGCATATTCAGCGTCTATCTGAGAAAACTGCCTTGAAGAGATTGAATGCATTAACTTACATGAAAAGGCAGATCAGGAATCCTTTATGTGGGATTATATTTTCCCGGAAAATGTTGGAGGGTACTGAATTGGGAACAGAACAGAAACAATTTCTGCATACTAGTGCTCAGTGCCAGCGGCAACTTAGCAAAATTCTAGATGACTCAGATCTTGACAGCATCTTAGACGGTTACTTGGATCTTGAGATGGCTGAATTTACTCTGCATGAAGTAATGATTGCCTCCCTTAGCCAAGTCATGACAAAAAGTAATGGAAAGAGTATCCGAATAGTCAATGATGTTGCAGAACAAATCGTAATGGAAACTTTATACGGTGATAGTCTAAGGCTTCAGCAGGTCTTGGCTGACTTCTTACTTATTTCCATCAATTTCACACCAACTGGAGGCCAGGTTGCTGTAGCAGGCTCTCTAACCAAAGAGCAGTTAGGGAAATCGGTCCATCTTGTTAAGTTAGAGCTCAGCATAACACATGGTGGGAGTGGGGTGCCAGAAGCATTACTGAACCAGATGTTTGGAAATAATGGACTAGAATCGGAGGAGGGTATGAGCCTACTGATCAGCAGAAAGCTGCTGAAGCTCATGAATGGAGATGTTCGCTATCTAAGGGAAGCAGGCAAATCAGCTTTTATCCTCTCTGCTGAACTTGCTGCAGCCCATAATTTGAAAGCTTAA 3564 0.4394 MAVPGHSCGEFEEGVGFQGEEGETWVLLPTPLFFILTLNFPYIFIASFLFFFSLFPFRVQFGVKMSSSRPSQSSSNSGRSRHSARVLAQTTVDAKLHATFEESGSSFDYSSSVRVSGTADGVNQPRSDKVTTAYLHHIQRGKMIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIKTLFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMDRLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVIAEITKPGLEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHAQYMANMDSIASLVMAVVVNDNEEDGDTDAVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQIIEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKLWRLGVTPSESQIREISLWLSEYHMDSTGLSTDSLSDAGFPSALSLGDVVCGMAAVRITSKDVVFWFRSHTAAEIRWGGAKHEAGEKDDGRRMHPRSSFKAFLQVVKSRSLPWKDYEMDAIHSLQLILRNAFRDTEGTDLQTNAINTKLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNIKVAELTGLPVGEAIGKHLLALVEDSSTDRVKKMLDLALQGEEEKNVQFEIKTFGSKMDSGPISLVVNACASRDLRDNVVGVCFVAHDITAQKNVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNPAMSKLTGWKREEVMDKMLLGEVFGTQMSCCRLKNQEAFVNFGIVLNKAMTGSETEKVAFGFFARNGKYVECLLSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQRLSEKTALKRLNALTYMKRQIRNPLCGIIFSRKMLEGTELGTEQKQFLHTSAQCQRQLSKILDDSDLDSILDGYLDLEMAEFTLHEVMIASLSQVMTKSNGKSIRIVNDVAEQIVMETLYGDSLRLQQVLADFLLISINFTPTGGQVAVAGSLTKEQLGKSVHLVKLELSITHGGSGVPEALLNQMFGNNGLESEEGMSLLISRKLLKLMNGDVRYLREAGKSAFILSAELAAAHNLKA 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01952 1187 SUPERFAMILY GAF domain-like 472 650 - -
Vimu3g01952 1187 PANTHER OS08G0260000 PROTEIN 131 1018 - -
Vimu3g01952 1187 Gene3D PAS domain 826 938 - -
Vimu3g01952 1187 Gene3D - 997 1174 IPR036890 -
Vimu3g01952 1187 FunFam Phytochrome 469 603 - -
Vimu3g01952 1187 CDD PAS 691 797 IPR000014 -
Vimu3g01952 1187 SUPERFAMILY GAF domain-like 262 461 - -
Vimu3g01952 1187 CDD PAS 824 935 IPR000014 -
Vimu3g01952 1187 PIRSF Phytochrome_conventional 63 1187 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Vimu3g01952 1187 FunFam Phytochrome 676 807 - -
Vimu3g01952 1187 Gene3D - 469 642 IPR043150 -
Vimu3g01952 1187 SMART gaf_1 282 474 IPR003018 GO:0005515
Vimu3g01952 1187 ProSiteProfiles PAC domain profile. 753 809 IPR000700 -
Vimu3g01952 1187 ProSiteProfiles Histidine kinase domain profile. 964 1183 IPR005467 -
Vimu3g01952 1187 NCBIfam PAS domain S-box protein 687 803 IPR000014 -
Vimu3g01952 1187 ProSitePatterns Phytochrome chromophore attachment site signature. 382 391 IPR013516 -
Vimu3g01952 1187 Pfam PAS fold 813 935 IPR013767 GO:0006355
Vimu3g01952 1187 Pfam PAS fold 683 797 IPR013767 GO:0006355
Vimu3g01952 1187 Gene3D PAS domain 138 385 - -
Vimu3g01952 1187 SMART HKATPase_4 1069 1181 IPR003594 -
Vimu3g01952 1187 Pfam Phytochrome region 477 650 IPR013515 GO:0006355|GO:0009584
Vimu3g01952 1187 Pfam PAS fold 133 249 IPR013654 GO:0006355
Vimu3g01952 1187 SMART pas_2 682 748 IPR000014 -
Vimu3g01952 1187 SMART pas_2 812 881 IPR000014 -
Vimu3g01952 1187 SMART HisKA_10 957 1022 IPR003661 GO:0000155|GO:0007165
Vimu3g01952 1187 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1069 1177 IPR003594 -
Vimu3g01952 1187 ProSiteProfiles PAS repeat profile. 680 750 IPR000014 -
Vimu3g01952 1187 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1018 1171 IPR036890 -
Vimu3g01952 1187 Gene3D PAS domain 674 811 - -
Vimu3g01952 1187 ProSiteProfiles PAS repeat profile. 813 865 IPR000014 -
Vimu3g01952 1187 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 282 454 IPR016132 -
Vimu3g01952 1187 SUPERFAMILY PYP-like sensor domain (PAS domain) 827 933 IPR035965 -
Vimu3g01952 1187 SUPERFAMILY PYP-like sensor domain (PAS domain) 138 250 IPR035965 -
Vimu3g01952 1187 Gene3D - 263 625 IPR029016 -
Vimu3g01952 1187 Pfam GAF domain 283 464 IPR003018 GO:0005515
Vimu3g01952 1187 SUPERFAMILY PYP-like sensor domain (PAS domain) 686 793 IPR035965 -
Vimu3g01952 1187 PRINTS Phytochrome signature 297 316 IPR001294 GO:0006355|GO:0009584
Vimu3g01952 1187 PRINTS Phytochrome signature 612 630 IPR001294 GO:0006355|GO:0009584
Vimu3g01952 1187 PRINTS Phytochrome signature 197 219 IPR001294 GO:0006355|GO:0009584
Vimu3g01952 1187 PRINTS Phytochrome signature 494 514 IPR001294 GO:0006355|GO:0009584
Vimu3g01952 1187 PRINTS Phytochrome signature 702 717 IPR001294 GO:0006355|GO:0009584
Vimu3g01952 1187 PRINTS Phytochrome signature 683 699 IPR001294 GO:0006355|GO:0009584
Vimu3g01952 1187 PRINTS Phytochrome signature 579 598 IPR001294 GO:0006355|GO:0009584
Vimu3g01952 1187 PRINTS Phytochrome signature 382 403 IPR001294 GO:0006355|GO:0009584
Vimu3g01952 1187 PRINTS Phytochrome signature 775 792 IPR001294 GO:0006355|GO:0009584
Vimu3g01952 1187 PRINTS Phytochrome signature 795 815 IPR001294 GO:0006355|GO:0009584
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01952 Vimu-Chr3 34461379 34467524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01952 65 1183 Histidine Kinase Gene Family AT1G09570 80.677 0.0 1907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01952 K12120 - gmx:100790763 2063.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01952 3 34461379 34467524 Vimu3g01952 3 34461379 34467524 ECH
Vimu6g01964 6 17635167 17640229 Vimu3g01952 3 34461379 34467524 PCT