Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01949 ATGGGAAAAGGTGAGGAAGATGCAGTGAACAACAATGGCGGCTACGAAGGAATCGGAATTTGGAAGGGGAGACACAGTGCCGCTAACAGGCCAATACCTCAATTTCTTCCTTTCCTTTTACTTCTAATTATGTTCCCCAGCGCTCACAGGCACAACACAACGCGACCCGGAAAAGACCCGAGTCGAAATTCAAGTATCTCTGACTCACTGACAGAGAGACAAACCTTAGAGAGGTTTAAAAGGCCAAACTTTCAGAGGCAAAAGAACGAGTGGCCTTATCCCCTCGCCGCTCCACCTTCTCGTTCTCGTGCTCTTCTTCGTCTTCTTCATCTTCTTCCCGACACAAACATGGCTTCTTCTTCTACCATACCTCTCTCTTCTCCCATTTCCATATTCAAAAACCCCTCTCTCCAACTTCTCAGAAGACCAACCACCTCCGTTTCATTCAACACCCTTCCCCGTAACCCCACTCTCTCTTCCGTTACTTCAGCCATTACCACCCCCACTTCTTCCGTTCTCACCCTACAACCTTTCGAGGGTTTAACACTGGACGACGTTAGCAATGGCCTCCAATCTGGCTATGATCACCAACCCGACCACGTCAGCCACCACGAACTTGACATTTCCAAGCTGTCTTTACCTTCCGCCCTCGTTCACGCGCTACAAAGACGTGGAATCACAAGCCTCTTTCCCATTCAGAGAGCTGTGTTAGTGCCTGCATTAGAAGGTAGAGATATCATTGCTCGAGCAAAGACCGGCACTGGCAAAACATTAGCATTCGGAATTCCAATTCTCAGAGGTCTCACTCATGATGATGAGCAAAGTTCTCACAGGAGGCATAGCAGGCTTCCCAAGGCATTGGTCCTAGCACCTACTAGGGAGTTAGCCAAGCAAGTTGAGAAAGAGATACAAGAATCTGCTCCTTACGTGAAAACGGTTTGTGTTTACGGGGGTGTTTCTTATGTAACGCAGCAGAGTGCGCTTTCGCGAGGTGTTGATGTGGTGGTTGGAACACCGGGTAGAATAATTGATCTATTGAATGGAGGTAGCCTTACTCTGAGTGAGGTGCAGTATTTGGTGCTTGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGACGTGGAGGTAATTTTGGATAAGGTCCCTGCGCAGCGCCAGACCATGCTGTTTTCTGCTACCATGCCTGGTTGGGTCAAGAAACTGTCCAGAAAGCATTTGAACAATCCTTTGACAATTGATTTGGTTGGCGAACAAGAAGAGAAACTTGCTGAAGGGATCAAACTTTATGCTTTATCTGCCACTGCCACTTCAAAACGGACAGTTCTGTCTGATCTTATAACTGTTTATGCAAAGGGTGGAAAGACTATTGTTTTTACGCAGACAAAAAAGGATGCTGATGAAGTATCATTGGCATTAACGAGTAGTATAGCTTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTTCGGCAAGGGAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCGAATGTTGATTTGGTTATACATTATGAACTTCCCAATGATGCTGAGACTTTTGTACATCGTTCTGGTCGCACTGGGCGGGCAGGAAAAGAGGGTACTGCCATATTGATGTACACCAGTAGCCAGAAGAGAACAGTTAGATCCCTTGAGCATGATGTTGGCTGCAAATTTGAATTCATTAGTCCACCGGCTATGGAAGAAATTTTGGAGTCTTCTGCTGAACAAGTTGTTGCTACACTTAATAGAGTTCATCCAGAGTCTGTGAAGTTTTTCACTGCAACTGCGCAAAAACTGGTTGAAGAACAAGGAGCAAGTGCCCTTGCAGCTGCTCTAGCACAGTTGAGTGGATTCTCTCGACCTCCATCATGTCGGTCTCTTATCAATCATGAACAGGGATGGATTACACTTCAACTTACTCGAGATTCAGACACTTCTGGAAGATTTTTTTCTGCAAGATCTGTCACTGGGTTTCTTTCTGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCAGATGAGAGGATTAAAGGAGCTGTCTTTGATCTCCCGGAGGAAGTTGCTAGAGAGTTGCTCAAAAAGGACCTGCCTTCTGGAAACACTATTTCCAAAATCACCAAATTACCTCCTTTGCAAGACGATGAACCAGCAAGTGATTTCTATGGGAAGTTTTCTGACAGAGACAGAAGTAACCGAAGGGGTTCTAATTCTAGGGATCAAAGAGGCTTTAGAAGTTCACGAGGATGGGAAGGAGGCCAAGACTCTGATGATGAGTTCGGAAGAGGCAGTAGAAATTTCAGATCAGGCAACAATAGGTCTCGAATGGGAAAAAACAGCGCCGATGACTGGCTAATTGGAGAAGCGGGCACGGAGGGGCCTGTTTCAATTGTGGACAACCTGGCCATCGAGCTTCAGATTGTCGCAAAAAACGAGACTTTTTCTAGTTTGTACATCTTTCGCTCTGGCACCACCTAA 2544 0.4572 MGKGEEDAVNNNGGYEGIGIWKGRHSAANRPIPQFLPFLLLLIMFPSAHRHNTTRPGKDPSRNSSISDSLTERQTLERFKRPNFQRQKNEWPYPLAAPPSRSRALLRLLHLLPDTNMASSSTIPLSSPISIFKNPSLQLLRRPTTSVSFNTLPRNPTLSSVTSAITTPTSSVLTLQPFEGLTLDDVSNGLQSGYDHQPDHVSHHELDISKLSLPSALVHALQRRGITSLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPILRGLTHDDEQSSHRRHSRLPKALVLAPTRELAKQVEKEIQESAPYVKTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLLNGGSLTLSEVQYLVLDEADQMLAVGFEEDVEVILDKVPAQRQTMLFSATMPGWVKKLSRKHLNNPLTIDLVGEQEEKLAEGIKLYALSATATSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSLALTSSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGKEGTAILMYTSSQKRTVRSLEHDVGCKFEFISPPAMEEILESSAEQVVATLNRVHPESVKFFTATAQKLVEEQGASALAAALAQLSGFSRPPSCRSLINHEQGWITLQLTRDSDTSGRFFSARSVTGFLSDVYSPAADEVGKIHLIADERIKGAVFDLPEEVARELLKKDLPSGNTISKITKLPPLQDDEPASDFYGKFSDRDRSNRRGSNSRDQRGFRSSRGWEGGQDSDDEFGRGSRNFRSGNNRSRMGKNSADDWLIGEAGTEGPVSIVDNLAIELQIVAKNETFSSLYIFRSGTT 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01949 847 MobiDBLite consensus disorder prediction 742 786 - -
Vimu3g01949 847 CDD DEADc 217 415 - -
Vimu3g01949 847 FunFam Nucleolar RNA helicase II 436 626 - -
Vimu3g01949 847 Pfam GUCT (NUC152) domain 635 735 IPR012562 GO:0003723|GO:0004386|GO:0005524
Vimu3g01949 847 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 237 414 IPR014001 -
Vimu3g01949 847 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 443 588 IPR001650 -
Vimu3g01949 847 MobiDBLite consensus disorder prediction 58 72 - -
Vimu3g01949 847 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 567 IPR027417 -
Vimu3g01949 847 CDD SF2_C_DEAD 440 557 - -
Vimu3g01949 847 Gene3D - 207 418 IPR027417 -
Vimu3g01949 847 Pfam Helicase conserved C-terminal domain 442 548 IPR001650 -
Vimu3g01949 847 SMART helicmild6 468 548 IPR001650 -
Vimu3g01949 847 CDD GUCT_Hera 643 722 - -
Vimu3g01949 847 MobiDBLite consensus disorder prediction 725 801 - -
Vimu3g01949 847 Pfam DEAD/DEAH box helicase 230 403 IPR011545 GO:0003676|GO:0005524
Vimu3g01949 847 SMART ultradead3 225 431 IPR014001 -
Vimu3g01949 847 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 202 781 - -
Vimu3g01949 847 FunFam ATP-dependent RNA helicase RhlE 198 417 - -
Vimu3g01949 847 Gene3D - 431 633 IPR027417 -
Vimu3g01949 847 MobiDBLite consensus disorder prediction 51 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01949 Vimu-Chr3 34422243 34431135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01949 211 570 Eukaryotic Initiation Factors Gene Family AT1G72730 35.989 4.95e-61 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01949 - - gmx:100815040 1164.06