Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01945 ATGGAAAAAGTAGTTTTCAGTGGTGTAATACTACTTGTGGTGTTATTCACCACAGAACTTAGAGTAGCATCTGCAGGTTGGTTGAAAGCTCATGCAACTTTTTATGGTGGAAGTGATGCCTCAGGAACAATGGGTGGTGCATGTGGGTATGGAAATCTGAACACAGATGGTTATGGAATAAAAACAGCTGCTCTGAGTACTGCTTTGTTTAATGATGGCAAGTCATGTGGTGGTTGCTATCAGATAGTTTGTGATGCAAGCCAAGTGCCCCAATGGTGCCTAAGAGGCACTTCCATTACGATCACTGCTACAAATTTCTGCCCTCCAAACTATGCACTACCTAGTGACAATGGGGGTTGGTGTAATCCTCCAAGACCACACTTTGACATGTCTCAACCTGCATTTGAGATGATCGCCAAATACAAGGCTGGAATTGTCCCAATTTTATACAGAAAAGTTGGGTGCAAAAGAAGTGGAGGCATCAGATTTACCATCAATGGGAAGGACTATTTCGAACTGGTGCTTATAAGCAACGTAGGAGGAGCAGGCGATATTTCTCTAGTTTGGATCAAAGGGTCAAAAATGAGTAACTGGGAATCTATGTCAAGGAATTGGGGTGCTAACTGGCAAAGCTTAAGCTACCTCAACGGTCAGAGCTTGTCCTTCAGAATCCAACTCAGCAATGGAAAAACTCTCACAGCTTTTGACGTGGCACCGTCCAATTGGAGATTTGGCCAGTCTTTCATCAGCAAGGTGCAGTCATGA 765 0.4379 MEKVVFSGVILLVVLFTTELRVASAGWLKAHATFYGGSDASGTMGGACGYGNLNTDGYGIKTAALSTALFNDGKSCGGCYQIVCDASQVPQWCLRGTSITITATNFCPPNYALPSDNGGWCNPPRPHFDMSQPAFEMIAKYKAGIVPILYRKVGCKRSGGIRFTINGKDYFELVLISNVGGAGDISLVWIKGSKMSNWESMSRNWGANWQSLSYLNGQSLSFRIQLSNGKTLTAFDVAPSNWRFGQSFISKVQS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01945 254 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Vimu3g01945 254 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Vimu3g01945 254 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Vimu3g01945 254 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Vimu3g01945 254 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Vimu3g01945 254 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Vimu3g01945 254 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Vimu3g01945 254 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Vimu3g01945 254 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Vimu3g01945 254 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Vimu3g01945 254 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Vimu3g01945 254 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Vimu3g01945 254 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Vimu3g01945 254 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Vimu3g01945 254 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Vimu3g01945 254 FunFam Expansin 17 156 - -
Vimu3g01945 254 Gene3D - 160 254 IPR036749 -
Vimu3g01945 254 Gene3D - 15 156 IPR036908 -
Vimu3g01945 254 PANTHER EXPANSIN-A15 10 250 IPR002963 GO:0009664
Vimu3g01945 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 250 IPR007117 -
Vimu3g01945 254 Pfam Lytic transglycolase 62 150 IPR009009 -
Vimu3g01945 254 Pfam Expansin C-terminal domain 161 239 IPR007117 -
Vimu3g01945 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 160 IPR007112 -
Vimu3g01945 254 FunFam Expansin 160 253 - -
Vimu3g01945 254 SUPERFAMILY PHL pollen allergen 157 250 IPR036749 -
Vimu3g01945 254 SUPERFAMILY Barwin-like endoglucanases 18 178 IPR036908 -
Vimu3g01945 254 CDD DPBB_EXPA_N 26 155 - -
Vimu3g01945 254 SMART dpbb_1 62 150 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01945 Vimu-Chr3 34402504 34403877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01945 5 253 Expansin Gene Family AT4G01630 74.900 2.97e-144 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01945 - - gmx:100813434 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01945 3 34402504 34403877 Vimu3g01945 3 34402504 34403877 ECH
Vimu6g01977 6 17747430 17748464 Vimu3g01945 3 34402504 34403877 PCT