Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01936 ATGCATGCATTTTTTCTTTTTACCTTTAGTTTATTTAAACTCTTCCCTCCTGGAGGCTGCAACTTATTCATATACAAGCCTGTGTTCTTTCATTTTTCTGCATGTAATCTTCCATGGACAGATTTCTTTAATTGGAACAGAGTTAAGTTACGGTACTGTGATGGGGCGTCTTTCAGTGGAGATGCCGAAGATGAGTCTGCACAGCTTCAATTTCGAGGACAAAAAATTTGGCTAGCTGCAATGGAGGAATTAATGTCGAAAGGAATGCAGAAAGCCAACCAGGCACTTCTCTCTGGATGCTCTGCGGGTGGTCTGGCATCCATAATACATTGTGATGAGTTCAGGAGCTTATTTCCAGAATCTTCCAAAGTGAAATGTTTGAGTGATGCAGGTTTCTTTCTTGATGCAATTGATGTATCTGGGGGACGCACACTGAGGAATCTGTTTGGAGGTGTGGTTCAGTTACAGGATGTACAAAAAAATCTTCCAAAAAGTTGTCTCAACCAACTAGACCCGACTTCGTGCTTCTTTCCTCAGAATTTGATCGATCATATTGAAACCCCATTGTTTCTACTCAACACAGCTTATGATGTGTGGCAGGTCCAAGCCAGTTTAGCACCACCTTCTGCTGACCGCCTTGGCTCTTGGAATGAATGCAAATCCAACCATGCAAATTGTAGCTCATCACAAATTCAGTTCCTCCAAGACTTCAGAAATCAAATGCTGACTGACATTACAGACTTCTCAAGGTCATCTCAAACTGGACTATTCATAAATTCTTGTTTTGCTCATTGTCAGTCTGAGAGACAGGAGACATGGTTTGCGGATGACTCTCCCCTTATTGAGGACAAGCCAATTGCAGTAGCTGTTGGAGACTGGTATTTTGATCGAGAAGTTGTCAAAGCTATTGACTGTGCTTACCCGTGTGACAACAGCTGCCATAATCTGGTGTTTAACTTTAAGTGA 966 0.4203 MHAFFLFTFSLFKLFPPGGCNLFIYKPVFFHFSACNLPWTDFFNWNRVKLRYCDGASFSGDAEDESAQLQFRGQKIWLAAMEELMSKGMQKANQALLSGCSAGGLASIIHCDEFRSLFPESSKVKCLSDAGFFLDAIDVSGGRTLRNLFGGVVQLQDVQKNLPKSCLNQLDPTSCFFPQNLIDHIETPLFLLNTAYDVWQVQASLAPPSADRLGSWNECKSNHANCSSSQIQFLQDFRNQMLTDITDFSRSSQTGLFINSCFAHCQSERQETWFADDSPLIEDKPIAVAVGDWYFDREVVKAIDCAYPCDNSCHNLVFNFK 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01936 321 Pfam Pectinacetylesterase 41 299 IPR004963 GO:0016787
Vimu3g01936 321 PANTHER NOTUM-RELATED 41 315 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01936 Vimu-Chr3 34337119 34349455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01936 41 319 Carbohydrate Esterase AT2G46930 68.459 1.24e-151 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01936 K19882 - gmx:100786972 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01961 6 17607175 17611020 Vimu3g01936 3 34337119 34349455 ECH
Vimu3g01936 3 34337119 34349455 Vimu6g01961 6 17607175 17611020 ECH
Vimu3g01936 3 34337119 34349455 Vimu3g01936 3 34337119 34349455 ECH
Vimu7g01588 7 14921498 14925662 Vimu3g01936 3 34337119 34349455 ECH
Vimu6g01983 6 17786369 17790399 Vimu3g01936 3 34337119 34349455 PCT