Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01934 GTTTCAGCTTCTCTCCTCATTTGGTCATTAAGGGAACAAGAAAAACTACAAATGGGAAGACACTCTTGCTGTTACAAGCAGAAGCTTCGGAAGGGTCTTTGGTCTCCTGAGGAGGATGAAAAACTTCTCAGGCATATTACTAAGTATGGTCATGGATGTTGGAGTTCTGTGCCTAAGCAAGCAGGTTTGCAAAGGTGTGGTAAGAGCTGCAGACTCAGGTGGATCAATTACCTTAGACCTGATTTAAAGAGAGGAACATTCTCACAAGAAGAAGAAAACCTTATCATTGAACTTCATGCAGTATTGGGGAACAGGTGGTCTCAAATTGCGGCACAGTTACCGGGGAGGACTGATAATGAAATAAAGAATCTGTGGAACTCTTGCTTGAAGAAGAAACTGAGGCAAAAAGGCATAGACCCTGTCACTCATAAACCACTGTCAGAGGTTGAGAACGGAGATGACACCGGGAAGAGCCAAGGTAAAGCACCGGAAGTGTCCAATGAATTGAACCTCCTGAAATCAGACAGCTCCAAGTCAGATTCAGCTTCCTATGAGCAGAGAACATCAATTTCTCCAAAAGCCTATGCACTCGAGATGGATGGTTCCTGCAGCTCCAAGATTTACTGCAGAAGTGACAGCAATTTCGTAACCAACAACTGTTACAACAGAGACTTCTTCCTAGACAGGTTTGTGAATGGTAGCCGCCAAGAGAGCTACAACACTAGCTGCCAGCCCTCAGATTTGATGGGAAATTTTCCAATTCAGATGAGTTATGCAACCAATGACTGTCTCCCTAATGATTCAAACTCTGCTCATTGGTTCGGCCAAACCGGAAGGCCTTTCGATATGAACTCTGAATTTCCTTTCAATGCTGCCACTTCTATTAATCATACTACACCTACAACCAATCTGTTTCTTCCTAATTCGTTTTGCTACAAGCCTTCACTTGCTGTTCCTTCAGACAGTGTTTCTACAGGCTATGGATCTCATTACTGGGAAGCCAGTGCCTCGAACAATAGCAACAGCAGCATTAGGAGCAATGGCAGCACAGAGTTGAAAGGTAGCAGCCCCTTAAACATCTTTTCTTCTTGGGGATTGGCAGAATGTAGCACCTCTACTACTAAAGAGGGACAGGGACAAATTCATATGATGGAGAATCATACAGAAGAAGCTAAGTGGGATGAGTACCTTCACAACCCAATCTCAATGCTGGCTTCTGTACAAAATCAAGCTCCTGAATCCTTATGCAACGAGATAAAAACATCAATGCATTTGGTACCTGACACTTTAGGGGCTATGTTACCTCATAGCACCAAGCAGCAAGAACCGTCTCAAACCTCTAGTATATTTTCCAAGGACATCCAGAAGCTCAGGGCAGCCTTTGGAAACATGTAA 1395 0.438 VSASLLIWSLREQEKLQMGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKPLSEVENGDDTGKSQGKAPEVSNELNLLKSDSSKSDSASYEQRTSISPKAYALEMDGSCSSKIYCRSDSNFVTNNCYNRDFFLDRFVNGSRQESYNTSCQPSDLMGNFPIQMSYATNDCLPNDSNSAHWFGQTGRPFDMNSEFPFNAATSINHTTPTTNLFLPNSFCYKPSLAVPSDSVSTGYGSHYWEASASNNSNSSIRSNGSTELKGSSPLNIFSSWGLAECSTSTTKEGQGQIHMMENHTEEAKWDEYLHNPISMLASVQNQAPESLCNEIKTSMHLVPDTLGAMLPHSTKQQEPSQTSSIFSKDIQKLRAAFGNM 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01934 464 MobiDBLite consensus disorder prediction 160 185 - -
Vimu3g01934 464 CDD SANT 34 78 IPR001005 -
Vimu3g01934 464 PANTHER MYB DOMAIN PROTEIN 55 18 376 - -
Vimu3g01934 464 CDD SANT 86 126 IPR001005 -
Vimu3g01934 464 Gene3D - 28 84 - -
Vimu3g01934 464 MobiDBLite consensus disorder prediction 140 185 - -
Vimu3g01934 464 SUPERFAMILY Homeodomain-like 29 125 IPR009057 -
Vimu3g01934 464 SMART sant 83 131 IPR001005 -
Vimu3g01934 464 SMART sant 30 80 IPR001005 -
Vimu3g01934 464 FunFam MYB transcription factor 85 157 - -
Vimu3g01934 464 Pfam Myb-like DNA-binding domain 84 128 IPR001005 -
Vimu3g01934 464 Pfam Myb-like DNA-binding domain 31 78 IPR001005 -
Vimu3g01934 464 FunFam Myb transcription factor 28 84 - -
Vimu3g01934 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Vimu3g01934 464 Gene3D - 86 151 - -
Vimu3g01934 464 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Vimu3g01934 464 MobiDBLite consensus disorder prediction 140 157 - -
Vimu3g01934 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 78 IPR017930 -
Vimu3g01934 464 ProSiteProfiles Myb-like domain profile. 26 78 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01934 Vimu-Chr3 34328058 34329631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01934 18 175 MYB Transcription Factor Family AT4G01680 83.544 3.79e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu3g01934 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01934 K09422 - gmx:100815881 743.806