Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01928 ATGGGCAAAGCTTCTAGTTCTTCCTCCTCTTCAATCACCAGCTGCAGGAACAACCCTTCCAATTCAACTGCATCCTCTCTCACACACCAACACAGCCAACACCTTCGCACAGATCTTAGGCTTGGACTCAGCATTTCCGCCACTCAACATGTTGCCTCTTCCAGTTCAGGGGGGCATTGGCAACCGATGCAGCCACATCTAAGCAGTTATTCACAAGCTACTGAAGTTAATGATTGCAGCGATCATACGAGCTTCTTTGTGAAGGTGTACATGGAAGGCATTCCAATTGGTAGAAAACTCAATTTGTTAGCTCATGATGGCTATCACGAGTTAGTGAAGACCCTTGAACAAATGTTTGACACCACCATTCTGTGGGGGACTGAGATGGATGGAGTTCAACAAGAGAGATGCCATGTTCTAACTTATGAAGATGGAGAAGGAGATTTGATCATGGTTGGGGACGTTCCATGGGAGTAA 477 0.4612 MGKASSSSSSSITSCRNNPSNSTASSLTHQHSQHLRTDLRLGLSISATQHVASSSSGGHWQPMQPHLSSYSQATEVNDCSDHTSFFVKVYMEGIPIGRKLNLLAHDGYHELVKTLEQMFDTTILWGTEMDGVQQERCHVLTYEDGEGDLIMVGDVPWE 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01928 158 MobiDBLite consensus disorder prediction 1 31 - -
Vimu3g01928 158 Pfam AUX/IAA family 72 158 IPR033389 -
Vimu3g01928 158 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Vimu3g01928 158 Gene3D - 78 158 - -
Vimu3g01928 158 SUPERFAMILY CAD & PB1 domains 80 158 - -
Vimu3g01928 158 ProSiteProfiles PB1 domain profile. 84 158 IPR000270 GO:0005515
Vimu3g01928 158 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 157 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01928 Vimu-Chr3 34255099 34255910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01928 88 157 B3 DNA Binding Superfamily AT4G23980 38.028 5.14e-11 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu3g01928 AUX_IAA 4.5e-21 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01928 K14484 - gmx:100781660 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01928 3 34255099 34255910 Vimu3g01928 3 34255099 34255910 ECH
Vimu6g01989 6 17856017 17856922 Vimu3g01928 3 34255099 34255910 PCT