Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01926 ATGCAACAACACCGTCGTCAAATCACCTTACTTGGATCCACCAATCTCGATCTAGATTCTACAACCGTCAACACCCTCAAAGAACTCGATTTTTTCTCACCGTCCAACAACACTCATACCGATAACCTCCATCATCTCCCTTCAAACATTCCTAAAGACAACGGATCACAACCTCTTTTCACTGATCACTTCGTAAATACCACTCTGAATTTAATGTGTCCGAGTCAGAGTGACCAACTCTCAAAATCAGCAGCAATTGATCAAAATCTTAAATCTCCGCTGAAAACGCTCCAAAAGGAGTTTCTGAGACTGCAAGAAGAGAACTACAGGTTGAGAACGATGTTGGACCAAGTCACCCAAAACTACCACCATCTTCAATTTTTCATTGCTATGCAGAAGCAAAAGCCGTATCAGTATACGAAGGTGGAGAAAACGGAGATGATGTCTGGTCATCATTTAATGGACCCACAATCATGCACCAAATTGGACGCTAAAGTTGTTGCATCAGTCTCCGATGATAAATCTAGTCAAGAGGCTAATCCTGATCGTGTAGAAGATGTTATTGAACAATCATCATCCAAGAGTCCCAAGTTTGAAGAATCTAAACCCGGTGAGCCTCCTTTAAGAAGAACCAGAGTTTCCGTGCGTGCAAGATCAGAAGCTCCAGTGATTTGCGATGGATGTCAATGGAGGAAATATGGGCAAAAAATATCCAAGGGTAATCCATGTCCTCGTGCCTACTACCGTTGCACCATGGCACTAGGATGTCCGGTTCGTAAACAGGTGCAAAGATGCACAGAGGACAAGAGTGTTTTGATAACAACTTACGAAGGCAATCATAACCACCCTCTTCCACCTTCAGCCACGGTGATGGCGAATTCTACCTCAGCAGCTGCAACTATGTTCTTATCTTCTTCAGGTTCAACAACAAGTAACGAAGCACTAAACAACAGTGTAGGAGTATTCTCTTCCATGTACCTCTCAGCCTCTGCACCATTTCCCACTATCACCCTTGACATGACCAACAACAACCCTATGCAACTGCACCGGGACACCTCCTCTTTTCCATTGCATGCAACTACTTTTCCTCAGCTACCAGGCCACCCTATCATCTTCCCTCACAAATTGCAACATTCATTAGGGCAAAAACAACCTTCGTTTATGACAGATATCATGACTGCAGCTGTTGCTTCCAATCCAAATTTCACTGTAGCGTTAGCAGCAGCTATCTCGTCAATTATTGGAGCTCCTAGAAGCAATGATGGAAATAGTATCTACAGTAACAATGGTGGAAATGTTCTTGCTCTTGGGACATCTATGTTGCCTGGATCCACTTAA 1338 0.435 MQQHRRQITLLGSTNLDLDSTTVNTLKELDFFSPSNNTHTDNLHHLPSNIPKDNGSQPLFTDHFVNTTLNLMCPSQSDQLSKSAAIDQNLKSPLKTLQKEFLRLQEENYRLRTMLDQVTQNYHHLQFFIAMQKQKPYQYTKVEKTEMMSGHHLMDPQSCTKLDAKVVASVSDDKSSQEANPDRVEDVIEQSSSKSPKFEESKPGEPPLRRTRVSVRARSEAPVICDGCQWRKYGQKISKGNPCPRAYYRCTMALGCPVRKQVQRCTEDKSVLITTYEGNHNHPLPPSATVMANSTSAAATMFLSSSGSTTSNEALNNSVGVFSSMYLSASAPFPTITLDMTNNNPMQLHRDTSSFPLHATTFPQLPGHPIIFPHKLQHSLGQKQPSFMTDIMTAAVASNPNFTVALAAAISSIIGAPRSNDGNSIYSNNGGNVLALGTSMLPGST 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01926 445 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 80 420 IPR044810 GO:0003700
Vimu3g01926 445 SUPERFAMILY WRKY DNA-binding domain 218 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu3g01926 445 FunFam probable WRKY transcription factor 31 209 286 - -
Vimu3g01926 445 Pfam WRKY DNA -binding domain 226 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu3g01926 445 ProSiteProfiles WRKY domain profile. 219 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu3g01926 445 SMART WRKY_cls 224 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu3g01926 445 MobiDBLite consensus disorder prediction 170 214 - -
Vimu3g01926 445 MobiDBLite consensus disorder prediction 176 214 - -
Vimu3g01926 445 Gene3D WRKY domain 209 286 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01926 Vimu-Chr3 34230474 34233068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01926 97 414 WRKY Transcription Factor Family AT4G04450 40.921 6.82e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu3g01926 WRKY 1.9e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01926 - - vun:114192179 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01926 3 34230474 34233068 Vimu3g01926 3 34230474 34233068 ECH
Vimu6g01991 6 17873433 17878035 Vimu3g01926 3 34230474 34233068 PCT