Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01900 ATGGCGAGTGGAAAGTTGCTTATCTCTAGTGTTTCCCTCATTCTCGTGGTGGGTGTTGCCATCGGTGTTGTGGTTGTGGTTAACAAAAGTGACTCATCTGATCCAAAAGTAGCTGCTCAACAAAAGAATGTGAAGGTAATGTGCGAAGGCACCGAAGACCCTAAGCTTTGTCACGAAACTATGAGCACCGTCAAAGGTAACACCTCAGACCCAAAGGTTTACATAGCAGCAGGAGTGGAAGCAACGATGAAGAGAGTGATACAAGCTTTGAACATGAGTGATAGGCTGAAAGTGGAGCATGGAGACAAGGATCCCGGCATAAAAATGGCTCTGGATGATTGTAAAGACTTGATCCAATTCGCTTTGGATTGCATCGAGTCCTCGGTTAACTTGGTCAACGACCAGAACATTCAAACCATGTATGACCAAACCCCAGACTTCAGGAACTGGTTGAGTGCTATAATATCGTACCAGGATACGTGCATGGACGGGTTAAACAACGGCACAAACGGTGAGACAGAAATTAAGGAAAAATTGAACACAGATAGTTTGGACGAAATGGGGAAGATGACGGGCATAGTTCTTGACATTGTGACAAACTTGTCAAATATCCTTGAGAAATTTGACTTGAAGTTAAATTTGAGACCTGCTTCTCGGCGTCTTCTAGAGATGGACGATGAAGGGTTACCTACGTGGTTCTCTGGTGCAGATCGCAAGCTCCTTGCTGCGGTGGATAGTGGTACAGCTGGGCAACCCAACGCAGTGGTTGCGAAGGATGGGAGTGGTAAATTCAAAACCGTTAAGGAAGCTATTGATTCCTACCCTAAAGGCCAGACAGGCAGATATACTATTTACGTTAAGGCTGGGATCTATGACGAGTACATCACCATTCCTAAGAAGTCAAGCAATATTCTCATTTATGGTGATGGCCCTGCAAAGACCATTATTACAGGTCACAAGAACTTTGTAGATGGCGTCAAGACAATGCAAACTGCTACCTTCGCCAACACTGCACCAGGATTCATCGCCAAATCAATGACATTCGAGAATACCGCGGGTGCCGCTAAGCACCAGGCAGTGGCATTCAGAAACCAGGGAGACATGTCAGCAATGTTCGACTGCGCATTTCACGGTTACCAAGACACACTGTACGTTCACGCCAACCGTCAATTCTACCGGAACTGTGAAATCTCTGGAACAATCGACTTCATCTTCGGAGCATCTGCTACTGTGATCCAGAACTCCAGAATCATCGCGAGGTTGCCACTATCTAACCAGTTCAACACAGTGACCGCGGACGGAACGAAGATGAAGAACATGGCGACAGGGATCGTTCTCCAGAACTGCGAGATAGTGCCAGAGAAGGCTCTGTACCCTAGCAGGTTGACCGTTAAATCGTACTTGGGAAGGCCGTGGAAGCAATATGCAAGAACTGTTGTGATGGAAAGCAACATAGGTGACGTTATTAATGCCGAGGGGTGGTGTCCTTGGGATGGGACCATGTTTCTTGACACCTTGTACTATGCTGAGTACGGTAACAGCGGACCTGGTTCCAACGTTCAAGGAAGGATAAAGTGGAAGGGTTACCATGGAATTATAACTAAAACCGATGCCGAAAAATTCACTGTTGGCCAATTCCTCAAAGGTGGAACTACTGGGAATGCTGAGGATTGGTTGAAGGCTACTGGGGTTCCTTTCGCCGCTGGATTCGTCAAAGCTTGA 1722 0.4669 MASGKLLISSVSLILVVGVAIGVVVVVNKSDSSDPKVAAQQKNVKVMCEGTEDPKLCHETMSTVKGNTSDPKVYIAAGVEATMKRVIQALNMSDRLKVEHGDKDPGIKMALDDCKDLIQFALDCIESSVNLVNDQNIQTMYDQTPDFRNWLSAIISYQDTCMDGLNNGTNGETEIKEKLNTDSLDEMGKMTGIVLDIVTNLSNILEKFDLKLNLRPASRRLLEMDDEGLPTWFSGADRKLLAAVDSGTAGQPNAVVAKDGSGKFKTVKEAIDSYPKGQTGRYTIYVKAGIYDEYITIPKKSSNILIYGDGPAKTIITGHKNFVDGVKTMQTATFANTAPGFIAKSMTFENTAGAAKHQAVAFRNQGDMSAMFDCAFHGYQDTLYVHANRQFYRNCEISGTIDFIFGASATVIQNSRIIARLPLSNQFNTVTADGTKMKNMATGIVLQNCEIVPEKALYPSRLTVKSYLGRPWKQYARTVVMESNIGDVINAEGWCPWDGTMFLDTLYYAEYGNSGPGSNVQGRIKWKGYHGIITKTDAEKFTVGQFLKGGTTGNAEDWLKATGVPFAAGFVKA 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01900 573 NCBIfam pectinesterase inhibitor domain 19 201 IPR006501 GO:0004857
Vimu3g01900 573 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Vimu3g01900 573 SUPERFAMILY Pectin lyase-like 248 567 IPR011050 -
Vimu3g01900 573 Gene3D - 248 570 IPR012334 -
Vimu3g01900 573 PANTHER PECTINESTERASE 19 560 - -
Vimu3g01900 573 Pfam Plant invertase/pectin methylesterase inhibitor 44 197 IPR006501 GO:0004857
Vimu3g01900 573 FunFam Pectinesterase 40 202 - -
Vimu3g01900 573 Pfam Pectinesterase 253 549 IPR000070 GO:0030599|GO:0042545
Vimu3g01900 573 SMART PMEI_2 39 197 IPR006501 GO:0004857
Vimu3g01900 573 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 202 IPR035513 -
Vimu3g01900 573 CDD PMEI-like_3 47 203 - -
Vimu3g01900 573 FunFam Pectinesterase 248 570 - -
Vimu3g01900 573 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 203 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01900 Vimu-Chr3 33956502 33958669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01900 6 571 Carbohydrate Esterase AT3G05610 40.981 1.03e-140 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01900 K01051 - gmx:100789650 897.116