Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01899 ATGAGTTGTTTCAGCTGTTGCGAGGAGGATGAACTCCAGAAGTCTGCTGAAAGTGGAGGACCCTATGTAGTAAAAAATCCAGCAGGGAATGATGGAAATTATCATGCTTCTGAAACTGCAAAGCAGGGCACTCAGCCGGTTAAAGCTCAGCCCATTGAAGTTCCTAATATACCAGCAGATGAACTGAAAGAAGGTACAGATAACTTTGGTCAAGATGCTCTGATTGGGGAGGGATCCTATGGAAGAGTATATTATGGTGTTCTTAAAAGTGGGCAGGCCGCCGCAATCAAGAACTTGGATGCCAATAAACAGCCCGATGAGGAATTTTTAGCCCAGGTTTCAATGGTATCAAGGCTGAAGCACGAAAATTTTGTTCAGTTGCTTGGATATTGCATTGATGGAAGCTCCCGTATTCTTGCTTATGAATATGCAATGACTGGACAATTGAATGCTAAGAGTGATGTATACAGTTTTGGGGTCGTCCTTTTGGAACTTCTAACTGGAAGGAAACCTGTAGATCATACACTACCACGCGGACAGCAGAGTCTGGTTACTTGGCTTAATGACACTGATGACAGCAATGGATATGTTTTGTTTCAGGCTACACCAAAACTCAGTGAGGATAAAGTCAGGCAGTGTGTTGATACAAGACTAGGAGGAGAATACCCACCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCACTTTGTGTGCAATATGAAGCTGATTTCAGACCAAACATGAGCATTGTAGTCAAAGCTCTTCAACCTTTGCTGGCTACTCGACCTGGACCTGCCGGTGAAACACCAAATTAA 816 0.4387 MSCFSCCEEDELQKSAESGGPYVVKNPAGNDGNYHASETAKQGTQPVKAQPIEVPNIPADELKEGTDNFGQDALIGEGSYGRVYYGVLKSGQAAAIKNLDANKQPDEEFLAQVSMVSRLKHENFVQLLGYCIDGSSRILAYEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWLNDTDDSNGYVLFQATPKLSEDKVRQCVDTRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLATRPGPAGETPN 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01899 271 MobiDBLite consensus disorder prediction 18 47 - -
Vimu3g01899 271 SUPERFAMILY Protein kinase-like (PK-like) 58 259 IPR011009 -
Vimu3g01899 271 ProSitePatterns Protein kinases ATP-binding region signature. 75 97 IPR017441 GO:0005524
Vimu3g01899 271 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 142 261 - -
Vimu3g01899 271 Gene3D Transferase(Phosphotransferase) domain 1 145 260 - -
Vimu3g01899 271 Gene3D Phosphorylase Kinase; domain 1 30 143 - -
Vimu3g01899 271 ProSiteProfiles Protein kinase domain profile. 69 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01899 271 FunFam PTI1-like tyrosine-protein kinase 3 33 143 - -
Vimu3g01899 271 Pfam Protein tyrosine and serine/threonine kinase 73 150 IPR001245 GO:0004672|GO:0006468
Vimu3g01899 271 MobiDBLite consensus disorder prediction 32 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01899 Vimu-Chr3 33951505 33953963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01899 134 262 Receptor kinase-like Gene Family AT3G58690 48.462 5.82e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vimu3g01899 PK_Tyr_Ser-Thr 2.7e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01899 K13436 - gmx:100808383 272.322