Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01889 ATGACGAATATTTCAAAGTCGGATTGCTTGAAGCAGCATCTAACGCTGCAGGCTACAGCCAAAGACACGGTTTTGGTTCAAAAAGTAAGAGCTACTCTCACCTTTCACAACATTTCTCAACCTATAAATACAATTCTCTCTTCCCTCTTCTCTCAAACATACATATCATACTCTGCACTCCCTCTAATGGCTGGATTTTTACACCTCCATCTAATGCTCTCAACCTTCTTTCTAATTCTCTTCATTTTCCCATCAGCCTCCGCATCTTTGAAGTTTGATTTCTACAAAACCACGTGTCCTTCTACGGAGGCAATAGTCAGAAGCGCTGTGGAGAAAGCCGTTTCTCTCAACCCAGGCATAGCTGCTGGTTTGATCAGAATGCATTTTCATGATTGTTTTGTGAGGGGCTGTGATGGTTCTGTGCTGTTGGAATCCACACCGGGAAACCCATCAGAGAGAGACCACCCTGCCAACAACCCAAGTCTACGTGGCTTCCATGTCATCGACGAAGCCAAGGCCCAAATAGAGGCAGAGTGTCCACACACCGTGTCCTGTGCAGACATTCTCGCTTTTGCTGCTCGAGACAGCGCCAACAAAGTTGGAGGCATAAACTACGCAGTGCCGGCTGGACGCAGAGATGGTCGTGTCTCCATCAGAGACGAAGCGTCACAACTGCCCCGTCCAACTCTCAACGCAGACCAACTCATTGATAACTTCCGACAAAAAGGGTTGTCTGCAGATGAAATGGTGACACTTTCTGGAGCTCATTCTATTGGTGTGTCACACTGTTCCTCCTTCTCCGACCGCTTGCACTCTTTCAATGCCACCTTTCCTCAAGATCCCTCCATGGATTCCAAATATGCTACGTCCTTGAAACCCAAGTGTCCACCAGGGAGCGATAACACGGTGCCTCTTGATGCATCAACTCCTAACCGTTTGGACAACAAATACTACACAGAGCTGAAGAACCACCGTGGTTTGCTTACCTCGGATCAGACGTTGCTCGCCAGCCCCTCAACCAGGCCAATGGTACTCACCAATGCTATATATTCCTCAGTCTGGGCTCGCAAGTTTGCTAAGGCAATGGTCCATATGGGTTCCATTGACGTCCTCACCGGTTCACAGGGTGAGATCAGGACCCGTTGTTCCGTCGTCAATTGA 1161 0.4841 MTNISKSDCLKQHLTLQATAKDTVLVQKVRATLTFHNISQPINTILSSLFSQTYISYSALPLMAGFLHLHLMLSTFFLILFIFPSASASLKFDFYKTTCPSTEAIVRSAVEKAVSLNPGIAAGLIRMHFHDCFVRGCDGSVLLESTPGNPSERDHPANNPSLRGFHVIDEAKAQIEAECPHTVSCADILAFAARDSANKVGGINYAVPAGRRDGRVSIRDEASQLPRPTLNADQLIDNFRQKGLSADEMVTLSGAHSIGVSHCSSFSDRLHSFNATFPQDPSMDSKYATSLKPKCPPGSDNTVPLDASTPNRLDNKYYTELKNHRGLLTSDQTLLASPSTRPMVLTNAIYSSVWARKFAKAMVHMGSIDVLTGSQGEIRTRCSVVN 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01889 386 PANTHER PEROXIDASE 25-RELATED 78 379 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu3g01889 386 Pfam Peroxidase 106 345 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu3g01889 386 Gene3D - 93 386 - -
Vimu3g01889 386 ProSiteProfiles Plant heme peroxidase family profile. 89 386 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu3g01889 386 FunFam Peroxidase 226 365 - -
Vimu3g01889 386 FunFam Peroxidase 93 234 - -
Vimu3g01889 386 PRINTS Plant peroxidase signature 99 118 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu3g01889 386 PRINTS Plant peroxidase signature 320 337 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu3g01889 386 PRINTS Plant peroxidase signature 123 143 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu3g01889 386 PRINTS Plant peroxidase signature 360 373 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu3g01889 386 PRINTS Plant peroxidase signature 182 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu3g01889 386 PRINTS Plant peroxidase signature 247 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu3g01889 386 PRINTS Plant peroxidase signature 163 176 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu3g01889 386 PRINTS Plant peroxidase signature 201 216 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu3g01889 386 PRINTS Plant peroxidase signature 304 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu3g01889 386 SUPERFAMILY Heme-dependent peroxidases 90 386 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu3g01889 386 ProSitePatterns Peroxidases active site signature. 121 132 IPR019794 GO:0004601
Vimu3g01889 386 Gene3D Peroxidase, domain 2 226 365 - -
Vimu3g01889 386 CDD secretory_peroxidase 90 385 IPR033905 GO:0004601|GO:0042744
Vimu3g01889 386 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu3g01889 386 PRINTS Haem peroxidase superfamily signature 306 321 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu3g01889 386 PRINTS Haem peroxidase superfamily signature 183 200 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu3g01889 386 PRINTS Haem peroxidase superfamily signature 201 213 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu3g01889 386 PRINTS Haem peroxidase superfamily signature 121 135 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu3g01889 386 ProSitePatterns Peroxidases proximal heme-ligand signature. 248 258 IPR019793 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01889 Vimu-Chr3 33861595 33862857 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01889 69 386 Peroxidase AT1G05260 47.077 8.98e-92 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01889 K00430 - gmx:100815158 562.762