Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01888 ATGGTGGCTGAAGCAGAGGTTGTGTGTCAACAGAACTTGGGTGTGTTGGATGTGAAGCATTTTCAAAACAAGGGAAGCGATGTTCACGAGATCGGAGATGCAGATGCTAATTTGCCTTTGAGTTTTGACCGAGTTCGTGTCACTGAGTTGGTCTCGGCCGAATTACTCACTTCACAAGAAGATGCTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTTGAATCAGCGGTTATGCAGTTTATACCTTCCCTCCGTTCAGGCAGTTTTGCTGACATTGGACCAAGGAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCATCTCATATGGGATCACCATACAACTTTCCCAAGCCAAGTGCTTTTTATGGGGTGTTTGATGGCCATGGAGGACCTGAAGCTGCAGCTTATATAAGAAAAAACGTCATAAAGTTCTTCTTCGAAGATGTCAGTTTCCCACAGAGTTCTGAAGTCAATAGTGTATTTCTGGAAGAGGTAGAGGATTCCCTCAGAAAGGCGTTTCTTTTGGCTGATTCAGCTTTGGCCGATGATTGCAGTGTGAATAGTTCATCAGGCACCACGGCCCTCACTGCTTTGATATTTGGAAGACTTCTAATGGTGGCCAATGCTGGCGACTGCCGAGCAGTTCTCTGTCGCAAAGGAGAGGCCATTGACATGTCTCAAGATCACAGGCCTATTTATCCATCAGAGCGGAGGCGTGTTGAAGAATTGGGTGGCTACATAGATGATGGTTATCTCAATGGGGTTTTATCAGTTACCCGAGCACTAGGGGACTGGGACATGAAGTTACCTAAGGGTGGTCCCTCACCTTTGATTGCAGAACCGGAGTTCCGGCAAGTTGTTCTAACAGAGGATGATGAATTCCTCATCATAGGATGCGATGGCATATGGGATGTCATGTCAAGTCAGCATGCAGTTAGCCTTGTTCGCAGAGGCCTAAGGAGGCACGACGATCCTGAAAAATGTGCCAGGGACCTGGTTATGGAGGCACTACGCCTGAACACATTTGATAATCTCACTGTGATCATTGTATGTTTTTCTTCCCTCGACCACATGGAGGCAGAGCCATCCCCTCCTCGCCAACGGAAATTGAGATGCTGTAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGGAGCTTGTTGGAAGGCAGTGCTAGCAACTGA 1191 0.4702 MVAEAEVVCQQNLGVLDVKHFQNKGSDVHEIGDADANLPLSFDRVRVTELVSAELLTSQEDAKSADRISDAALESAVMQFIPSLRSGSFADIGPRRYMEDEHIRIDDLSSHMGSPYNFPKPSAFYGVFDGHGGPEAAAYIRKNVIKFFFEDVSFPQSSEVNSVFLEEVEDSLRKAFLLADSALADDCSVNSSSGTTALTALIFGRLLMVANAGDCRAVLCRKGEAIDMSQDHRPIYPSERRRVEELGGYIDDGYLNGVLSVTRALGDWDMKLPKGGPSPLIAEPEFRQVVLTEDDEFLIIGCDGIWDVMSSQHAVSLVRRGLRRHDDPEKCARDLVMEALRLNTFDNLTVIIVCFSSLDHMEAEPSPPRQRKLRCCSLSAEALCSLRSLLEGSASN 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01888 396 ProSiteProfiles PPM-type phosphatase domain profile. 85 355 IPR001932 -
Vimu3g01888 396 CDD PP2Cc 85 355 IPR001932 -
Vimu3g01888 396 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169
Vimu3g01888 396 Gene3D - 61 361 IPR036457 -
Vimu3g01888 396 FunFam Probable protein phosphatase 2C 22 69 358 - -
Vimu3g01888 396 PANTHER PROTEIN PHOSPHATASE 2C 74 353 IPR015655 GO:0004722|GO:0006470
Vimu3g01888 396 Pfam Protein phosphatase 2C 95 347 IPR001932 -
Vimu3g01888 396 SMART PP2C_4 75 353 IPR001932 -
Vimu3g01888 396 SUPERFAMILY PP2C-like 78 357 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01888 Vimu-Chr3 33842894 33845342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01888 98 392 PP2C-type Phosphatase Gene Family AT3G62260 71.622 4.32e-156 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01888 K14803 - gmx:100819791 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01888 3 33842894 33845342 Vimu3g01888 3 33842894 33845342 ECH