Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01884 CAGCTCTCCTACGTCGGCGTTGACACCAAGATCCTCGTCGTCGACCGCACCATCAAGTTCCCCGCTTTTCTTTCCAAGATCACAGCTCTCTACAACGCCACGCCACAAGACCTCACCTTTAAGCACCAACTCCCTGGCGAAGACCTCGACGCCCTAATCTCTATTACCAACAACGAGAACTTGGAACACATGATGCAAAAGTACGATCATCTCTATCGCCCTTCCAAACTTGTTAGGACGAGACTCTTTCTCTACACGCTTTCGTCAAACCCTAATTCCTCGTTTTCCTCAGATCGTGATCGCTTCGTTGATGCTCTTAACTTTGCTCCAATTCCCTGA 339 0.4926 QLSYVGVDTKILVVDRTIKFPAFLSKITALYNATPQDLTFKHQLPGEDLDALISITNNENLEHMMQKYDHLYRPSKLVRTRLFLYTLSSNPNSSFSSDRDRFVDALNFAPIP 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01884 112 SMART PB1_new 1 87 IPR000270 GO:0005515
Vimu3g01884 112 PANTHER OS05G0427100 PROTEIN-RELATED 1 107 - -
Vimu3g01884 112 Pfam PB1 domain 2 84 IPR000270 GO:0005515
Vimu3g01884 112 SUPERFAMILY CAD & PB1 domains 2 93 - -
Vimu3g01884 112 Gene3D - 4 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01884 Vimu-Chr3 33803641 33803979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01884 1 107 MAP Kinase Kinase Kinase AT5G57610 36.842 9.19e-19 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01884 - - vra:106767655 158.303