Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01877 ATGGATACTAACTGTGGGCCCTTAGTAAAGACACAACCCAAGATGCAGTATGGTGAAAACGAGATGTTAGGCCTCAGAAAAGGTCCATGGACGGTTGACGAGGACACCATTCTGCTCAATTACATCACCACCCATGGTGAAGGTCACTGGAATTCCCTCGCACGATCTGCAGGTTTAAGGAGGAGTGGGAAGAGTTGCAGATTAAGGTGGCTGAACTACTTGCGCCCCGATGTGCGGCGTGGAAACATCACACTCCAAGAACAGATACTAATTCTCGACCTTCATTCTCGGTGGGGCAACAGGTGGTCGAAGATTGCACAGCACCTGCCAGGAAGAACGGACAATGAAATAAAGAACTATTGGAGGACGAGAGTGATAAAACAGGCGAAGCAACTCAGGTGCGATGTCAACAGCAAAGAGTTCAGAGACACCTTGCGTTATGTGTGGATGCCGCGCTTACTGGAACGGATTCAGCCCGCATCGCAAATTCTCCAGCCTCAGATGAAACTGGACCCAGGCCCAACTGAAATTCAGGGCTTTCACGGTTTAGATTCGGTGACGGAGTGGAGTAAAGGGAGCCACCCCGCCGGTTCTTACTCGGACTCATCATCCGTGGAGCTCCAAGTTCATTCGAATTCAGAGCATAGCGATTGTTCGGGTTCGGGTCTGGATCCGTGGGAAGAAGGGAATGGTGGGGGTGAATGGTTGGAAAGTTTGTGGAATGAGCTCGAAATAAAATACAGTTCCCTTCCGTGA 756 0.5026 MDTNCGPLVKTQPKMQYGENEMLGLRKGPWTVDEDTILLNYITTHGEGHWNSLARSAGLRRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLRCDVNSKEFRDTLRYVWMPRLLERIQPASQILQPQMKLDPGPTEIQGFHGLDSVTEWSKGSHPAGSYSDSSSVELQVHSNSEHSDCSGSGLDPWEEGNGGGEWLESLWNELEIKYSSLP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01877 251 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Vimu3g01877 251 FunFam MYB transcription factor 84 147 - -
Vimu3g01877 251 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Vimu3g01877 251 FunFam Myb transcription factor 27 79 - -
Vimu3g01877 251 CDD SANT 84 123 IPR001005 -
Vimu3g01877 251 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 24 198 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vimu3g01877 251 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Vimu3g01877 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Vimu3g01877 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Vimu3g01877 251 MobiDBLite consensus disorder prediction 191 219 - -
Vimu3g01877 251 SMART sant 26 76 IPR001005 -
Vimu3g01877 251 SMART sant 79 127 IPR001005 -
Vimu3g01877 251 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Vimu3g01877 251 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Vimu3g01877 251 Gene3D - 27 79 - -
Vimu3g01877 251 MobiDBLite consensus disorder prediction 191 227 - -
Vimu3g01877 251 CDD SANT 29 74 IPR001005 -
Vimu3g01877 251 Gene3D - 84 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01877 Vimu-Chr3 33699983 33701566 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01877 23 165 MYB Transcription Factor Family AT1G48000 74.126 2.17e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu3g01877 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01877 K09422 - gmx:778065 296.975