Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01875 ATGGAACCACCTAAGATATTTTTCAACAACCACCTCGTATTCCAAACCAAACAAGTCTATATTGGGGCCATGACAACCTTATCAGATACTCAATTATCTCCTACATATGGAAGTGAAGAAGAATTCGCAATTAAGAAAGGATCATGGACTGAGGAAGAAGATTCTCTTCTGATCAACTATGTCAACCTCCATGGCGAAGGCCACTGGAATTCCCTCGCTCGCTCTGCTGCGAACGGGCAAAAGCTGCAGACTAAGATGGTTGAACTACTTGCGTCCAAATGTTCGACGTGGGAACATCACTCTTCAAGAACAGCTCTTGATTCTCGAACTCCATTCCCGATGGGGCAACCGTTGCCTGGGAGAACAGATAATGAAATAAAGAACTATTGGAGGACGAGAGTGGTGAAGCAAGCCAAGCAACTCAAATGTGATGTGAACAGCAAGCAGTTTAGGGATGCTGTGCGTTTTGTTTGGATGCCACGCCTTATGGAGAGGATTCAGGCTTCTTCTGGGAATGCTTCTTCTTCCTATGGAAATGGCCAGACCACATTGTGCAACACTCAAACCCACGGTGAATCTAGAGTGGCCAATCCCATGATGTTTTCTGAAAGCTCAATGATTTCCAAGTACTCTTCAGGGGTTGATGTTCAGCCTCCTTCTCTCTCTGATGCGAGTACAACTTCATCTTGCAATTTAATGGGAGATGGTAGCTGTTCATCGGAAAGTGTTGAAAAGGGGTGGCAACAGTGGGACTACTCTGATCTCCAAGCATTTGAACCGAACCATGGTTTTGATGATGCAGACTTGTGGACCGATGAAAATATGTGGTTTTTGCAGCAGCATCTTGCTGATGATTTTTGA 861 0.4483 MEPPKIFFNNHLVFQTKQVYIGAMTTLSDTQLSPTYGSEEEFAIKKGSWTEEEDSLLINYVNLHGEGHWNSLARSAANGQKLQTKMVELLASKCSTWEHHSSRTALDSRTPFPMGQPLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDAVRFVWMPRLMERIQASSGNASSSYGNGQTTLCNTQTHGESRVANPMMFSESSMISKYSSGVDVQPPSLSDASTTSSCNLMGDGSCSSESVEKGWQQWDYSDLQAFEPNHGFDDADLWTDENMWFLQQHLADDF 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01875 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 69 IPR017930 -
Vimu3g01875 286 SMART sant 45 136 IPR001005 -
Vimu3g01875 286 Gene3D - 43 139 - -
Vimu3g01875 286 SUPERFAMILY Homeodomain-like 44 130 IPR009057 -
Vimu3g01875 286 ProSiteProfiles Myb-like domain profile. 41 134 IPR001005 -
Vimu3g01875 286 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 43 211 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vimu3g01875 286 Pfam Myb-like DNA-binding domain 46 74 IPR001005 -
Vimu3g01875 286 CDD SANT 48 132 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01875 Vimu-Chr3 33647930 33649036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01875 39 281 MYB Transcription Factor Family AT5G49620 35.811 6.87e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu3g01875 Myb_DNA-binding 1.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01875 K09422 - gmx:778040 295.434