Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01874 ATGGTTTCCAAAACCCACTCCCAACTCATTTTGTTCCTGTTTCTTCTTTCATCGCTAAACATTACTTCCAGCTCGTACACACATGATGCAGCCAATTTTGACAAGTGGGTATCTCGAAATGTGAAAAAGTATGAGGAGAGAAAGAGCATTTTGAAAACCAAAGTGAAGCTGAGGCAGGCTGAGAGTAACAAAGCTATCATAACAGTAATACAAGACGGTTCTGGTGATTTCAAAACCATTTCAGAAGCTCTCAATAGCATTCCACCACGTAACACTAGGAGAGTTATAGTGTCCATTTCTCCCGGTGTATATAGGGAGAAGGTGATGATCCCAAGAACAATGGCTTTTGTTACACTGTCAGGGAACGCAGGGAATCCTCCAACCATTACTGGAAATGATACAGCATCTGCCTCAGGAAGAAATGGCACTCCCTTAGGAACGTTCCAGAGTGCAACTGTTGCTGTGGATGCTAGCTACTTTGTGGCCATCAACATCAAATTTGAGAACAGTGCTCCACATGAGATTGGAAGGAGAGGAGAACAAGGCGTGGCTCTTAGATCTCAGGAACCAAAGCTGCTTTTTACAATTGCAGTTTCAGTGGAGCTCAAGATACTCTCTATGATCATAAAGGTCTTCATTTCTTCAACAACTGCTATATTCAAGGTTCTGTCGATTTCATCTTCGGTTCTGCCAGATCCCTTTACCAGGAGGGTATATTATGGAGAATACATGTGTAGTGGGCCAGGGGCTAACTTGGCTGGAAGAGTGCCATGGACACGAGTGCTTACAGATGAAGAGGCCAAGCCATTTATTGGGACCCAATTCATTGAAGGAGACACTTGGCTCATTAACACCAGCTGA 861 0.4379 MVSKTHSQLILFLFLLSSLNITSSSYTHDAANFDKWVSRNVKKYEERKSILKTKVKLRQAESNKAIITVIQDGSGDFKTISEALNSIPPRNTRRVIVSISPGVYREKVMIPRTMAFVTLSGNAGNPPTITGNDTASASGRNGTPLGTFQSATVAVDASYFVAINIKFENSAPHEIGRRGEQGVALRSQEPKLLFTIAVSVELKILSMIIKVFISSTTAIFKVLSISSSVLPDPFTRRVYYGEYMCSGPGANLAGRVPWTRVLTDEEAKPFIGTQFIEGDTWLINTS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01874 286 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 236 282 - -
Vimu3g01874 286 Pfam Pectinesterase 67 189 IPR000070 GO:0030599|GO:0042545
Vimu3g01874 286 Gene3D - 20 195 IPR012334 -
Vimu3g01874 286 Gene3D - 214 286 IPR012334 -
Vimu3g01874 286 SUPERFAMILY Pectin lyase-like 64 191 IPR011050 -
Vimu3g01874 286 SUPERFAMILY Pectin lyase-like 231 282 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01874 Vimu-Chr3 33636313 33641807 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01874 235 282 Carbohydrate Esterase AT5G47500 39.583 1.50e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01874 K01051 - lja:Lj5g3v1573150.1 210.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01874 3 33636313 33641807 Vimu3g01874 3 33636313 33641807 ECH