Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01863 TTAAGTTCGAGTTTGTGGCGTGTGAGAGATGAAGGATTTGAGCATTTGAGAGATCAACTCGTTTGGTATATGGAGAAGAAGGAGATGGTCGTGAAGACTGAGGATGCGGTTGGGTCCTCTTCCTTCCCTTGTTATAATTCAAACGTTTATCCATTCTCGAACGCCTTTGATTTCTCTGAGGTGGAAAAGAGCTCTTTAGGGTTTATGGAGCTACTGGGTGTGCAGGATTACAGTCCTCTGCTTGAGTTGCCTCAACTTTCAACCGTTTCTGTGCCTCATCACTCTACAGTTAAGGCTCCACCTGATAACGGAAAAGAGTGTTCCGAGGTGTTGAACCACCAACCCGCCACTCCGAACTCTTCTTCAATTTCATCTGCATCCAGTGATGCTGTCAATGATGAACAGAATAAGACTCTAGACCAAGTTGAAGAAGATGACGATGAAGAAGAAGAAGGACAACAAAAGACTAAGAAACAGTTGAAGCCCAAGAAGACAAATCAGAAGAGACAGAGAGAACCAAGATTCGCGTTCATGACGAAAAGCGAGGTCGATCATCTGGAAGATGGGTACAGATGGAGGAAGTACGGTCAAAAGGCCGTGAAAAACAGCCCTTTTCCCAGGAGTTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGCGTGGAGCGATCTTTCACTGATCCAAGCGTGGTAGTCACAACCTACGAAGGCCAACACACACATCCAAGCCCGGTTTTGCCTCGCTCAGGTGTCCCCGCTGGATACGCTACCAACTTTGCTTCAGTTTTTCCACAAGCAGGAAACTACTTATCCCACTATCAGCAGCAGCAGCACCACCAACAGCAACAACTTATTTTCAACACATTGTCCTCTTTGGGTTTCCCTTACAATGATTCTTCCACTTCAAAGAACGCGGGTTTTACTCAAGAGAGACGGCTTTGTAATCCGGGGACGAATGCATTTCTAACGGACCACGGACTTCTTCAAGATGTTGTTCCCTCACACATGTTGAAAGAAGAGTAG 1029 0.4577 LSSSLWRVRDEGFEHLRDQLVWYMEKKEMVVKTEDAVGSSSFPCYNSNVYPFSNAFDFSEVEKSSLGFMELLGVQDYSPLLELPQLSTVSVPHHSTVKAPPDNGKECSEVLNHQPATPNSSSISSASSDAVNDEQNKTLDQVEEDDDEEEEGQQKTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSVVVTTYEGQHTHPSPVLPRSGVPAGYATNFASVFPQAGNYLSHYQQQQHHQQQQLIFNTLSSLGFPYNDSSTSKNAGFTQERRLCNPGTNAFLTDHGLLQDVVPSHMLKEE 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01863 342 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 110 282 IPR044810 GO:0003700
Vimu3g01863 342 SMART WRKY_cls 186 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu3g01863 342 Pfam WRKY DNA -binding domain 187 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu3g01863 342 Gene3D WRKY domain 171 247 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu3g01863 342 FunFam WRKY transcription factor 57 172 246 - -
Vimu3g01863 342 ProSiteProfiles WRKY domain profile. 181 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu3g01863 342 MobiDBLite consensus disorder prediction 110 135 - -
Vimu3g01863 342 SUPERFAMILY WRKY DNA-binding domain 178 246 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu3g01863 342 PIRSF WRKY_txn_fact_IIc 24 342 IPR017396 GO:0003700
Vimu3g01863 342 MobiDBLite consensus disorder prediction 92 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01863 Vimu-Chr3 33448612 33450378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01863 57 342 WRKY Transcription Factor Family AT2G47260 48.923 1.92e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu3g01863 WRKY 3.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01863 - - gmx:100784158 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01863 3 33448612 33450378 Vimu3g01863 3 33448612 33450378 ECH
Vimu6g02041 6 18265465 18266737 Vimu3g01863 3 33448612 33450378 PCT