Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01855 ATGGTGTGGAAACGAGGCAGTGAGATTTGCCAATGTGCTTATCCCATAAAGCTAGACTTGCTTCTTTTGAATGTCTCTCTAAACCCTGACTGGAATGTTGTTTTTCTCGATGATTTGGCCACCCAACTTGAGCTGCACACTACCCAAATTGAAATTATTAAATTTTACCTACTGAGCTTGTCGACATTGAATATATCGATGGATATCACTCCAAATAAAGGGATCAGTTTCTCCGCCAGTGAAGCCGCTAAAATAAATTCGTCGCTCTCATTGCATAAGGTTCAACTAGACAGCAGATATGTGGGCAACTACAGTGTCCTTAATATAACCTGGTTTAAAGCTCCACCTCCTTCTCAAGGATGTACTCAACTAGTCTATTGTGGTACCAGAATTTTTGTGGTTTCTGAATTTACTACTTTGGAAGAGGAACTTCATACAACCGCCTCTTCTTGGGCCTTAAAGGCTCCTACAATTGCTACATCACCTAAGAGAGCTCCTCACAGGAAAGCACCTCCAACCACATTATCGAGTACTTCTTACAGGGGAAAGCATTCAAACTTGCCTCTTATTCTTGGAATTGTGACTGGCGTACTCTTCATTTCCATTGTATGTGTACTTACACTTTGCTTATGCACGATGCGGCGAAAAACAAAAACACCTCCCAGAGAAACTGTAAAGGTTGCCAATTTTTCACATAGTTATAAGTCTGTTTGGAGGTTTGCTACTAAGTTTGCTCTCTTTTCTACAGAAAAGCCAAGGATTGAAAGCACAGTGCCAGCTGTTGGGTCTCTTCCTCATCCAACCAGTACACGCTTTATTGCTTATGAAGAACTGAAAGAAGCTACCAATAATTTTGAATTAGCAAGCGTACTCGGAGAAGGAGGTTTTGGTAGAGTTTTTAAAGGTGTCTTGAATGATGGAACTGCTGTAGCAATTAAGAGGCTTACTAGTGGAGGGCAACAGGGTGACAAAGAATTTTTGGTTGAGGTTGAGATGCTTAGTCGGTTGCATCATCGTAACCTTGTAAAACTAGTGGGATACTATAGTAATCGTGACGCATCACAAAATCTACTTTGCTATGAGCTTGTTCCAAATGGAAGTTTAGAGGCCTGGCTTCATGGTCCCCTGGGAATAAATTGCCCTTTGGATTGGGACACTAGAATGAAGATTGCCCTTGATGCTGCAAGAGGACTTGCATACCTGCACGAAGATTCACAGCCCTGTGTTATACACAGAGATTTCAAGGCATCCAACATATTACTTGAGAACAACTTTCATGCAAAAGTTGCAGATTTTGGTCTAGCTAAACAGGCACCTGAAGGCAGGGCCAATTATTTATCTACTCGAGTCATGGGCACATTTGGGTATGTAGCTCCTGAGTATGCTATGACTGGTCATCTTCTTGTTAAAAGCGACGTTTATAGTTATGGGGTTGTCTTGCTGGAACTGTTGACCGGAAGGAAACCAGTGGATATGTCACAGCCAACTGGACAAGAGAACCTTGTTACTTGGGCAAGACCTATTCTTAGAGACAAGGATCGGTTGGAAGAACTTGCTGATCCAAGGCTTGGGGGAAGGTATCCAAAAGAAGATTTTGTACGTGTTTGCACTATTGCTGCAGCCTGTGTTGCTCCTGAAGCAAGCCAGCGACCTACAATGGGTGAAGTGGTACAGTCACTTAAAATGGTGCAGCGGATCACAGAAAGTCATGATCCTGTGTTAGCCACATCCATTACACGGCCCAACATGAGACAGTCTTCTACCACGTATGAGTCGGATGGGACTTCTTCAATGTTTTCTTCGGGTCCTTACTCTGGTCTAAGTGCCTTTGACCATGACAACATTTCGAGGACGGCTGTTTTCTCGGAAGATCTTCACGAGGGACGATGA 1890 0.4312 MVWKRGSEICQCAYPIKLDLLLLNVSLNPDWNVVFLDDLATQLELHTTQIEIIKFYLLSLSTLNISMDITPNKGISFSASEAAKINSSLSLHKVQLDSRYVGNYSVLNITWFKAPPPSQGCTQLVYCGTRIFVVSEFTTLEEELHTTASSWALKAPTIATSPKRAPHRKAPPTTLSSTSYRGKHSNLPLILGIVTGVLFISIVCVLTLCLCTMRRKTKTPPRETVKVANFSHSYKSVWRFATKFALFSTEKPRIESTVPAVGSLPHPTSTRFIAYEELKEATNNFELASVLGEGGFGRVFKGVLNDGTAVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDASQNLLCYELVPNGSLEAWLHGPLGINCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPTGQENLVTWARPILRDKDRLEELADPRLGGRYPKEDFVRVCTIAAACVAPEASQRPTMGEVVQSLKMVQRITESHDPVLATSITRPNMRQSSTTYESDGTSSMFSSGPYSGLSAFDHDNISRTAVFSEDLHEGR 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01855 629 ProSiteProfiles Protein kinase domain profile. 285 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01855 629 Gene3D Transferase(Phosphotransferase) domain 1 363 578 - -
Vimu3g01855 629 PANTHER OS01G0750732 PROTEIN 6 583 - -
Vimu3g01855 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Vimu3g01855 629 FunFam Receptor-like serine/threonine-protein kinase ALE2 363 578 - -
Vimu3g01855 629 ProSitePatterns Protein kinases ATP-binding region signature. 291 313 IPR017441 GO:0005524
Vimu3g01855 629 Gene3D Phosphorylase Kinase; domain 1 266 362 - -
Vimu3g01855 629 SUPERFAMILY Protein kinase-like (PK-like) 261 562 IPR011009 -
Vimu3g01855 629 Pfam Protein tyrosine and serine/threonine kinase 286 560 IPR001245 GO:0004672|GO:0006468
Vimu3g01855 629 FunFam Receptor-like serine/threonine-protein kinase ALE2 265 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01855 Vimu-Chr3 33312794 33321703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01855 1 629 Receptor kinase-like Gene Family AT4G02010 67.829 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vimu3g01855 PK_Tyr_Ser-Thr 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01855 - - gmx:100305437 999.579