Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01850 ATGAGGAAACAACTTGGAGAGGCTGCAAATGATGCATTGGGAACCTTGTCCCTCAAGATAAATCAGTTGAAAAAGCAAATCCAGGCGGAGAGAATTGTATACATTAAAGAAAAAATTCAGAGCAATGAGAAGAAGCTACAATGTCATACCTCAGGAGTCCTATCGGCAATAACAACAAGGGGTTTTTCACAGACAGAGGGAAATAGGAAAACTCCAATTCTTTCTAGAATTGATTGTCCTTTATGTAAATTCAATGGTTTCTCTCCAGTCTCAGGAGACAAAGACCACAACAATCAAGATGTATTATCTGCTACAAGTATCAAAATACCATATATTGAAAGATTACCACCATATACCTCTTGGATATTTCTCGACAGAAATCAGAGAATGGCCGATGATCAGTCAGTTGTTGGAAGAAGAAGAATCTACTATGATCAACATGGAAGTGAAGCACTGATATGTAGTGACAGCGAGGAAGAGTTAACAGAACATGAGGAAGAAAAACATGAATTTTCTGAGGCTGAAGACCGTGTTCTGTGGATGGCATTTGAGGAATATGGGTTAAATGAGGAGGTACTGAATATTGTTAGCGAATTTGTTGGGGGCACCAGTTCAGAAATTCAGGAGAGATACAAAAGTATTAAGGAAAAGAACATTGGTAGGTTGGATCAGGATCAGCCTTCGGAAAACTCAGGAGATCTTGAATCTATTATTGGCATCTCTCCAGAGAAAACCCTGAGTGCTGCATTAGATTCTTTTGATAATCTTTTTTGTCGCCGGTGCCTGATTTTTGATTGTCGTCTTCATGGCTGTTCTCAACCTTTAGTATATCCTAGTGAAAAACAGACAATATGGTCTGATCCTGAAGGTGACAAGAAACCATGCAGTGATCAGTGTTACCTTCAGTTAAATGAAGTCAAAGGTGTGTCAGAAGATGCAACTTCTGGGTCTGATCAAAATAAGAGAACTACAACTATGGAAGAGACAGATGGGATATTGGCACCCTCCACTATAGAGGAACCTGGTAATCAGAGTACATCACCTTTTCCAACAGAAGTTGATTGTCATAGATCTCTCAATTTAAATGTTCCTATCTCAGTAAGTGTGGAGAAACGGAAAGTCATAAATGTGTCAGATACAGCACTTTGTGACTCAACTCCCCCTCCTGATGGTTCTCAAAATTCTAATAAAAAACTGAAGACTATCTCAGATGATGTAATTACTGTAAATAGTGATTCTAGCAATAACCTTTTGGGTGCATGCGATGAAAGTAAACATACTATTACTTGTGCAATTTTGGACAAATCTGTTAAACATAATTCCAATAAATTAATAGACTCTTCTAGCACTTGCGATACGGATGAGCAGGACAAAAATATTGGGGATGGACCCAAAGACCCTACAAATAAAACAGAATTTAAGAAGTTGTCCAGTTCAATGGAAGGGAAAGTTGATGGGATGCCAGGTCTCTCAGATTGGAAACCTCTAGAGAAAGAATTATACTTGAAGGGAGTAGAGATGTTTGGAAGAAATAGCTGCCTCATAGCAAGGAACTTACTTTCTGGCTTAAAGACTTGCATGGAAATAGCTACATACATGCATGCTGGAGGATTGTCAATGCCCCACGGATCTATCATTGCACCTAGTTCAATCATGGATGACAAGGGAAAATTTGATGCAGAGTACACAGACCAGGAGATGCCATCTAGGTCACGATTGCTGAGGAAAAGGGGCAAAACTAGGAAGTTTAAATATTCTTGGAAGTCTACTGGCCACCCATCAATATGGAAAAGAATTGCTGATGGGAAAAACCAATCTTGCAAGCAGTATACACCATGTGGATGTCAGTCAATGTGTGGAAAGGAATGTACTTGTGTTAATGGTGGAACATGCTGTGAAAAGTATTGCGGCAATTTGGGAGTAATCTGGATTGGTGGTTTTGTTCAAAAAGCTGCAAAAATCGATTCAGAGGATGCCATTGTGCCAAGAGTCAGTGCAGAAGTCGACAATGTCCTTGTTTTGCTGCAGGACGGGAATGTGACCCAGATGTTTGTCGGAATTGCTGGGTTAGGTCATCCATCCTTGTGCCCTCTCTCACATCTCTCCCCTGTTCCAACCACAACTCCAACCGGTGCATGGCAATGCCTGATGACTGACAACCCTGTGCTCAGTTGTGGTGATGGTTCATTAGGGGAGCCACCCCGGCGTGGAGAAGGTCAATGTGGAAATATGAGGCTTCTTTTAAGGCAACAACAGAGAATTCTCTTGGCAAAGTCTGACGTTGCAGGATGGGGAGCTTTCTTGAAGAACCCTGTTAACAAAAATGATTATCTAGGAGAGTACACGGGAGAACTGATCTCCCACCGAGAAGCCGATAAGCGTGGGAAAATATATGACCGTGCCAACTCTTCTTTCCTTTTTGACTTGAATGATCAGTACGTTCTTGATGCTTATCGCAAAGGAGACAAGTTAAAATTTGCAAACCACTCGTCAAACCCCAACTGCTACGCAAAGGTGATGCTGGTTGCTGGAGATCACCGAGTAGGCATATTTGCCAAGGAACACATAGATGCTAGCGAGGAGCTCTTCTATGATTATCGCTATGGTCCAGATCAAGCACCGCCATGGGCACGTAAACCTGAGGGTTCCAAGAGCGACGAATCAACAGTTTGTCAAGGCAGAGCAAAGAAACACCAGTCTCATTGA 2706 0.4161 MRKQLGEAANDALGTLSLKINQLKKQIQAERIVYIKEKIQSNEKKLQCHTSGVLSAITTRGFSQTEGNRKTPILSRIDCPLCKFNGFSPVSGDKDHNNQDVLSATSIKIPYIERLPPYTSWIFLDRNQRMADDQSVVGRRRIYYDQHGSEALICSDSEEELTEHEEEKHEFSEAEDRVLWMAFEEYGLNEEVLNIVSEFVGGTSSEIQERYKSIKEKNIGRLDQDQPSENSGDLESIIGISPEKTLSAALDSFDNLFCRRCLIFDCRLHGCSQPLVYPSEKQTIWSDPEGDKKPCSDQCYLQLNEVKGVSEDATSGSDQNKRTTTMEETDGILAPSTIEEPGNQSTSPFPTEVDCHRSLNLNVPISVSVEKRKVINVSDTALCDSTPPPDGSQNSNKKLKTISDDVITVNSDSSNNLLGACDESKHTITCAILDKSVKHNSNKLIDSSSTCDTDEQDKNIGDGPKDPTNKTEFKKLSSSMEGKVDGMPGLSDWKPLEKELYLKGVEMFGRNSCLIARNLLSGLKTCMEIATYMHAGGLSMPHGSIIAPSSIMDDKGKFDAEYTDQEMPSRSRLLRKRGKTRKFKYSWKSTGHPSIWKRIADGKNQSCKQYTPCGCQSMCGKECTCVNGGTCCEKYCGNLGVIWIGGFVQKAAKIDSEDAIVPRVSAEVDNVLVLLQDGNVTQMFVGIAGLGHPSLCPLSHLSPVPTTTPTGAWQCLMTDNPVLSCGDGSLGEPPRRGEGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIFAKEHIDASEELFYDYRYGPDQAPPWARKPEGSKSDESTVCQGRAKKHQSH 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01850 901 MobiDBLite consensus disorder prediction 873 901 - -
Vimu3g01850 901 CDD SET_EZH 752 868 - -
Vimu3g01850 901 ProSiteProfiles SET domain profile. 752 867 IPR001214 GO:0005515
Vimu3g01850 901 Gene3D SET domain 600 869 IPR046341 -
Vimu3g01850 901 SMART set_7 752 873 IPR001214 GO:0005515
Vimu3g01850 901 MobiDBLite consensus disorder prediction 450 479 - -
Vimu3g01850 901 MobiDBLite consensus disorder prediction 880 894 - -
Vimu3g01850 901 MobiDBLite consensus disorder prediction 444 489 - -
Vimu3g01850 901 Pfam SET domain 763 866 IPR001214 GO:0005515
Vimu3g01850 901 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 6 901 IPR025778 GO:0031519
Vimu3g01850 901 SUPERFAMILY SET domain 580 870 IPR046341 -
Vimu3g01850 901 Coils Coil 154 174 - -
Vimu3g01850 901 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 10 637 IPR045318 GO:0006338|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01850 Vimu-Chr3 33274157 33284308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01850 741 895 C2H2 Transcription Factor Family AT2G23740 25.000 1.99e-09 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu3g01850 SET 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01850 - - pvu:PHAVU_007G213900g 1141.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01850 3 33274157 33284308 Vimu3g01850 3 33274157 33284308 ECH
Vimu6g02052 6 18366435 18372177 Vimu3g01850 3 33274157 33284308 PCT