Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01847 ATGGCTTCGATTCAACGTCCTGCAAGTTCAGGATCGTCGGAGGGAGGAGATCCGGCTGTAGACGAGAGGAAGAGGAAGCGGATGGAGTCGAACCGCGAATCGGCGAGGAGATCGCGGATGCGGAAGCAGAAGCAGCTGGAAAACCTAACCGAGGAAGCGAGCCGATTGCAAAACGAGAACGCACATCTGGCGCAGAGCATAAAGGCGAAGGAGGAAGCGTACGTTGAGATGGAAGCCGCCAACGACATCCTCAAAGCTCAGACAATGGAGCTCGCCGATCGTTTGCGGTTTCTGAATTCAATTCTCGAGATCGCCGAAGACGTCGGCGACCTCTCCGTCGAGATCCCGCAGATTCCGGATCTTTTCTTCAATCCTTGGCAGATCCCCCACCCTATGATGGCGTCGCCGGACATGTTCATCCATGGAACTGAAGGACTGTTTGCTTCATAA 450 0.5467 MASIQRPASSGSSEGGDPAVDERKRKRMESNRESARRSRMRKQKQLENLTEEASRLQNENAHLAQSIKAKEEAYVEMEAANDILKAQTMELADRLRFLNSILEIAEDVGDLSVEIPQIPDLFFNPWQIPHPMMASPDMFIHGTEGLFAS 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01847 149 Coils Coil 25 87 - -
Vimu3g01847 149 CDD bZIP_plant_GBF1 24 74 IPR045314 GO:0003700|GO:0006355
Vimu3g01847 149 SMART brlzneu 19 83 IPR004827 GO:0003700|GO:0006355
Vimu3g01847 149 PANTHER BZIP TRANSCRIPTION FACTOR 44 6 126 - -
Vimu3g01847 149 Pfam bZIP transcription factor 23 79 IPR004827 GO:0003700|GO:0006355
Vimu3g01847 149 Coils Coil 147 149 - -
Vimu3g01847 149 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 21 68 IPR004827 GO:0003700|GO:0006355
Vimu3g01847 149 FunFam BZIP transcription factor 21 72 - -
Vimu3g01847 149 SUPERFAMILY Leucine zipper domain 23 77 IPR046347 GO:0003700|GO:0006355
Vimu3g01847 149 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 26 41 IPR004827 GO:0003700|GO:0006355
Vimu3g01847 149 Gene3D - 21 75 - -
Vimu3g01847 149 MobiDBLite consensus disorder prediction 17 49 - -
Vimu3g01847 149 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01847 Vimu-Chr3 33246524 33248434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01847 1 139 bZIP Transcription Factor Family AT3G62420 50.685 1.56e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu3g01847 bZIP_1 1.2e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01847 K25786 - gmx:778189 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02059 6 18404902 18405336 Vimu3g01847 3 33246524 33248434 PCT