Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01844 ATGGCCTTGAGGCCTTCATCTTTCGTCATCCTACTGGCATATGGTGCTTTGTTAATTCTGATTTTTGTGACACCATGCTGGTATGTCATAATCCTACGTATGGAAAAACATGTGAAATTGTCGGATTCAAAAAACAGTGTCTCGCAATTGCAATCAGAAATTGAACAGTTAGGTGAAGTGTTACGGCCAATGAAATCATCATCAACCAACATGGCAAGATTTTTTAGTTCTAGCCTTCATGATATTACCAATGTCTCATTCTCTGATATAAAGATCAAGGTGGCTCCGTTTCTGTTTGCAGCATTTGAGACAATTCCATACTTGGCCGAAATCTCATACATAGGTGTGGAAGGTCTCTTTTTCTCCTACTACACTCATAATCATCAACTTCTTGCTATGTACTGCAACTCATCATCAACTTCTGTTGCCTCCAACAAAATCTTCATTCAACCTGTCAATCCTGAAACTGGAGAGCTTCATGGTGAACCCACAAACATGCTATCTAACCCCTTTATCAATGCAAGTTGGATTGCTGAAGCACTTAATGTATCAACTGGGTTTTCCTCATTCAGAACCAAATGGGTCAATTCTGATCTTTTGTTCCTCACTTCATCCAGAATCATCACAAGAGGACTCATCTCTCTTGGCTTTTCTGCAATGCCAATAACTCATTCTGTCACTCGAATTGACCAACAACATGGCACAAGCTCCTATTTAGCTACCAAAGATGGACAAGTTGTTGTGCCAGGGATTCAACTCACCCATTTCCTCATTTCTAATGATACAGTTTCGTTTCAATCACTGAATGCAAATACTACTAATGGGGTCACTGTCTCATGCAAGGATGAAACTGCTGCTTCTAGTTTCAATATTAGAGATATTGCATATTCAATTCACTGCTACACCATCGATATAATGGGAGTCGAATCGGTGTATGTATTGGCTGTCCCAAAAGAAGGATATGCAATCATTGATGGGAATTACAAGGAAAAGGGGTTGATAGTGTTTGTGGCAACAATGGTCACTATATTTATAGCTTTCTTCAGTTTCCTATACGTAAACTGCAGAGCCTTTAGGCGAGAAATGCATTTGTGCGCCTCACTGATCAAACAATGTGAAGCCACCCAACAAGCTGAGAAAAAGAATATGAACAAGAGCACCGCTTTTGCGAGTGCCAGCCATGATGTTCGTGCTTCTCTCGCAGGAATCACCGGTTTGATAGAGATATCTTCAGAGTTGGTTGTCCCCGGTTCCGAATTGGAGACCAATCTCAAACAAATGAATGGTTGTACCCAAGACTTACTAGGACTGTTGAATTCTATACTAGACACAAGCAAAATTGAGGCAGGAAAAATGCAACTGGAAGAAGAGGAGTTTGATGTGTTCAATCTCTTAGAAGATGTAGTTGACTTTTACCATCCTGTGGCTGCGAAGAAAGGTGTAGATCTGGTGTTGGACCCTTGTGACGGTTCTGTAGTGGGATATTCACGCGTGAAAGGTGACAGAGGCAAACTAAAACAAGTTCTGTCTAATTTACTGAGCAATGCTGTGAAATTTACTGATGAGGGACACATAGCGGTACGCGCATGGACTCGGAAGCGAAAACTACCGCAGAACTCCTCCACAGTCACTTTTAACCAGTTTGGTTTCAAGCAATATTTATCATGCTTATTTCGAAACAAAACTCAATCACGTAGTGACGTCGAATCCACGCGTTCAATCCAAGAAGATCCTCATTCTATGGATTTTATATTTGAAGTGGATGACACGGGAAAAGGAATTCCTAAAGAGAAATACAAGTCTGTTTTTGAGAATTACGTCCAAATCAAAGATACTGCTCTTGGGCAAGGGGGAACTGGCTTGGGACTCGGGATTGTGCAGTCGCTGGTTCGTTTGATGCATGGAGATATTGAAATTGTGGAGAAGGATACTGGTGAAAGAGGGACATGTTTCAAGTTCAATGTGGTTCTCAGTGTATGTGAGAATGAGGCAGTGTCAGATGGTGTTGGTGGTGGATCAGGAGACAGAATAATAGAATGTGAGGAGGAGCAGCAGACTATGCAGGCTTCGTGTTCTGGTTCTTCTAGAATTTGTGCCATGAGTCCGAAGTTACGAATATGCAGCTCTAGTCCAAAGCCTGAGGCTTCCCTTGTGGTTCTTTTGATTGTTGACGAAGAGCGCCAAAGGACTTCACAAAGGTTCATGGAGAGGTTAGGGATCAAAGTGAAAGTTGTGAATACAGGGAAAGGTTTGTTTTATACTCTGAGGAAGATCAAGCTGAAGGCTAAGCATTCTAGTGGCCAAAATTCTCCAGGTTCTTCGGATTTCAGTCATTGGTCTACACCTCATAGTTCTCTCGACATAGCCACAAGAGTTTCTTTGAGTTCTATGGAAGGAACTGAGCACACGCCTTTAGTTTTCAAGAAAACTGATGTGGGAGCTTCTCCCGGCTTCATCCTTGTTGTGATTGATGCAAATGCAGGACCATTTTCTGAGCTTTACACGATTGTGTCAAACTTCAAGAAAGAGCTTCGCAACCCGTGTAAGGTTGTGTGGTTGGATAAGCCCTTTATGCGTAGAATCAAGTTGAAGGCCCTTAATCAAGATGACATCGTCACATCCAAACCATTTCATGGTACTCGTTTGTTCCAAACCATAAAGCTCCTTCCTGAATTTGGTGGTTCTTGGCAAAGCAATTGTAGTAGAGCTAAGAGGGAAAGGGCTAATGAGAGAGCTACATCGAACACTTACAAGGATCCAGGTTTGTCAAAATACACGTCTCCTCTGCTGGACAGATCACAAGTCTGTTCTTCAACTGGTGAACAAATTTTGAAGAGAAAAGGAGCATCGAATGCAAAAATAAGTCTTTTTCATGATGGAGAAACACAAGAGATTGGAAACTCATCAGGGTCTGAGAAACCCTTGAGGGGTAAGAAGTTTTTGGTTGCTGATGACTCTGCAATTTTGCGCAGTATAGCTTCTGCTACTCTGATTTCTCTTGGTGCAACCGTGGAGCAATGTGAGAATGGTGAACAGGCTGTGAGGTTAGTTGATGAGGGTCTACCTCGGGAATATCCTCATCCTCCTTACGATTACATCTTAATGGATTGTCAGATGCCAATAATGGACGGTCTTGATGCAACAAAGTGGATACGAAAGATAGAGAAAGCTTATGGTGTTCGCATTCCTATCATTGCATTGACTGCTGCAACAGAAAGAATAACGATAGAGAGTGGAATGGACTATCATATGAATAAACCCATTAACAGAGAGGATTTACTTAAAGCCATCACATATATAAATGGTAAAGTGTGA 3315 0.4175 MALRPSSFVILLAYGALLILIFVTPCWYVIILRMEKHVKLSDSKNSVSQLQSEIEQLGEVLRPMKSSSTNMARFFSSSLHDITNVSFSDIKIKVAPFLFAAFETIPYLAEISYIGVEGLFFSYYTHNHQLLAMYCNSSSTSVASNKIFIQPVNPETGELHGEPTNMLSNPFINASWIAEALNVSTGFSSFRTKWVNSDLLFLTSSRIITRGLISLGFSAMPITHSVTRIDQQHGTSSYLATKDGQVVVPGIQLTHFLISNDTVSFQSLNANTTNGVTVSCKDETAASSFNIRDIAYSIHCYTIDIMGVESVYVLAVPKEGYAIIDGNYKEKGLIVFVATMVTIFIAFFSFLYVNCRAFRREMHLCASLIKQCEATQQAEKKNMNKSTAFASASHDVRASLAGITGLIEISSELVVPGSELETNLKQMNGCTQDLLGLLNSILDTSKIEAGKMQLEEEEFDVFNLLEDVVDFYHPVAAKKGVDLVLDPCDGSVVGYSRVKGDRGKLKQVLSNLLSNAVKFTDEGHIAVRAWTRKRKLPQNSSTVTFNQFGFKQYLSCLFRNKTQSRSDVESTRSIQEDPHSMDFIFEVDDTGKGIPKEKYKSVFENYVQIKDTALGQGGTGLGLGIVQSLVRLMHGDIEIVEKDTGERGTCFKFNVVLSVCENEAVSDGVGGGSGDRIIECEEEQQTMQASCSGSSRICAMSPKLRICSSSPKPEASLVVLLIVDEERQRTSQRFMERLGIKVKVVNTGKGLFYTLRKIKLKAKHSSGQNSPGSSDFSHWSTPHSSLDIATRVSLSSMEGTEHTPLVFKKTDVGASPGFILVVIDANAGPFSELYTIVSNFKKELRNPCKVVWLDKPFMRRIKLKALNQDDIVTSKPFHGTRLFQTIKLLPEFGGSWQSNCSRAKRERANERATSNTYKDPGLSKYTSPLLDRSQVCSSTGEQILKRKGASNAKISLFHDGETQEIGNSSGSEKPLRGKKFLVADDSAILRSIASATLISLGATVEQCENGEQAVRLVDEGLPREYPHPPYDYILMDCQMPIMDGLDATKWIRKIEKAYGVRIPIIALTAATERITIESGMDYHMNKPINREDLLKAITYINGKV 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01844 1104 Gene3D - 957 1101 - -
Vimu3g01844 1104 SMART HisKA_10 384 450 IPR003661 GO:0000155|GO:0007165
Vimu3g01844 1104 SUPERFAMILY CheY-like 974 1098 IPR011006 -
Vimu3g01844 1104 ProSiteProfiles Histidine kinase domain profile. 391 659 IPR005467 -
Vimu3g01844 1104 SMART HKATPase_4 500 659 IPR003594 -
Vimu3g01844 1104 PANTHER TWO-COMPONENT HISTIDINE KINASE 43 1098 - -
Vimu3g01844 1104 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 373 452 IPR036097 GO:0000155|GO:0007165
Vimu3g01844 1104 Coils Coil 40 60 - -
Vimu3g01844 1104 ProSiteProfiles Response regulatory domain profile. 979 1101 IPR001789 GO:0000160
Vimu3g01844 1104 Pfam Response regulator receiver domain 981 1097 IPR001789 GO:0000160
Vimu3g01844 1104 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 439 654 IPR036890 -
Vimu3g01844 1104 Gene3D - 371 451 - -
Vimu3g01844 1104 SMART REC_2 978 1097 IPR001789 GO:0000160
Vimu3g01844 1104 Gene3D - 452 664 IPR036890 -
Vimu3g01844 1104 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 500 657 IPR003594 -
Vimu3g01844 1104 CDD HisKA 382 446 IPR003661 GO:0000155|GO:0007165
Vimu3g01844 1104 PRINTS Bacterial sensor protein C-terminal signature 617 635 IPR004358 GO:0016310|GO:0016772
Vimu3g01844 1104 PRINTS Bacterial sensor protein C-terminal signature 583 597 IPR004358 GO:0016310|GO:0016772
Vimu3g01844 1104 PRINTS Bacterial sensor protein C-terminal signature 601 611 IPR004358 GO:0016310|GO:0016772
Vimu3g01844 1104 CDD REC_hyHK_CKI1_RcsC-like 980 1097 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01844 Vimu-Chr3 33190782 33196229 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01844 1 1090 Histidine Kinase Gene Family AT2G47430 39.664 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu3g01844 HATPase_c 2.1e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01844 - - var:108325233 1751.1